Shearing of the CENP-A dimerization interface mediates plasticity in the octameric centromeric nucleosome

Asymmetric Unwrapping of Nucleosomes under Tension Directed by DNA Local Flexibility

(2015) Thuy T.M. Ngo et al.   CELL

Structural transitions of centromeric chromatin regulate the cell cycle-dependent recruitment of CENP-N

(2015) Junnan Fang et al.   GENES & DEVELOPMENT

The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects

(2015) David Winogradoff et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

CENP-C reshapes and stabilizes CENP-A nucleosomes at the centromere

(2015) S. J. Falk et al.   SCIENCE

Two Arginine Residues Suppress the Flexibility of Nucleosomal DNA in the Canonical Nucleosome Core

(2015) Hidetoshi Kono et al.   PLoS One

Molecular dynamics simulations demonstrate the regulation of DNA-DNA attraction by H4 histone tail acetylations and mutations

(2014) Nikolay Korolev et al.   BIOPOLYMERS

Subnucleosomal Structures and Nucleosome Asymmetry across a Genome

(2014) Ho Sung Rhee et al.   CELL

CENP-A octamers do not confer a reduction in nucleosome height by AFM

(2014) Christine A Codomo et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

CENP-A octamers do not confer a reduction in nucleosome height by AFM

(2014) Marcin P Walkiewicz et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The budding yeast Centromere DNA Element II wraps a stable Cse4 hemisome in either orientation in vivo

(2014) Steven Henikoff et al.   eLife

Imaging the fate of histone Cse4 reveals de novo replacement in S phase and subsequent stable residence at centromeres

(2014) Jan Wisniewski et al.   eLife

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

(2013) Sander Pronk et al.   BIOINFORMATICS

The role of the nucleosome acidic patch in modulating higher order chromatin structure

(2013) A. A. Kalashnikova et al.   Journal of the Royal Society Interface

CENP-A confers a reduction in height on octameric nucleosomes

(2013) Matthew D D Miell et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The octamer is the major form of CENP-A nucleosomes at human centromeres

(2013) Dan Hasson et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Reconstitution of hemisomes on budding yeast centromeric DNA

(2013) Takehito Furuyama et al.   NUCLEIC ACIDS RESEARCH

A Conserved Mechanism for Centromeric Nucleosome Recognition by Centromere Protein CENP-C

(2013) H. Kato et al.   SCIENCE

Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss

(2013) Maxim Y. Sheinin et al.   Nature Communications

Cell-Cycle-Coupled Structural Oscillation of Centromeric Nucleosomes in Yeast

(2012) Manjunatha Shivaraju et al.   CELL

Cell-Cycle-Dependent Structural Transitions in the Human CENP-A Nucleosome In Vivo

(2012) Minh Bui et al.   CELL

Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation

(2012) D. A. Potoyan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleosome Structure(s) and Stability: Variations on a Theme

(2011) Andrew J. Andrews et al.   Annual Review of Biophysics

Energy Landscape Analyses of Disordered Histone Tails Reveal Special Organization of Their Conformational Dynamics

(2011) Davit A. Potoyan et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Assembly of Drosophila Centromeric Nucleosomes Requires CID Dimerization

(2011) Weiguo Zhang et al.   MOLECULAR CELL

Crystal structure of the human centromeric nucleosome containing CENP-A

(2011) Hiroaki Tachiwana et al.   NATURE

Replacement of histone H3 with CENP-A directs global nucleosome array condensation and loosening of nucleosome superhelical termini

(2011) T. Panchenko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone fold modifications control nucleosome unwrapping and disassembly

(2011) M. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A Resolution

(2011) K.-J. Armache et al.   SCIENCE

Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes

(2011) Mekonnen Lemma Dechassa et al.   Nature Communications

Role of Histone Tails in Structural Stability of the Nucleosome

(2011) Mithun Biswas et al.   PLoS Computational Biology

Structure of RCC1 chromatin factor bound to the nucleosome core particle

(2010) Ravindra D. Makde et al.   NATURE

The structure of (CENP-A–H4)2 reveals physical features that mark centromeres

(2010) Nikolina Sekulic et al.   NATURE

Centromeric Nucleosomes Induce Positive DNA Supercoils

(2009) Takehito Furuyama et al.   CELL

Active establishment of centromeric CENP-A chromatin by RSF complex

(2009) Marinela Perpelescu et al.   JOURNAL OF CELL BIOLOGY

The Molecular Origin of Like-Charge Arginine−Arginine Pairing in Water

(2009) Jiří Vondrášek et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Optimized Molecular Dynamics Force Fields Applied to the Helix−Coil Transition of Polypeptides

(2009) Robert B. Best et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Counterion Atmosphere and Hydration Patterns near a Nucleosome Core Particle

(2009) Christopher K. Materese et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fission Yeast Scm3 Mediates Stable Assembly of Cnp1/CENP-A into Centromeric Chromatin

(2009) Jessica S. Williams et al.   MOLECULAR CELL

Cse4 Is Part of an Octameric Nucleosome in Budding Yeast

(2009) Raymond Camahort et al.   MOLECULAR CELL

Centromere assembly requires the direct recognition of CENP-A nucleosomes by CENP-N

(2009) Christopher W. Carroll et al.   NATURE CELL BIOLOGY

Dynamics and function of compact nucleosome arrays

(2009) Michael G Poirier et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Relaxation dynamics of nucleosomal DNA

(2009) Sergei Y. Ponomarev et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure

(2008) Xu Lu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation

(2007) Berk Hess   Journal of Chemical Theory and Computation