Friend or foe: differential responses of rice to invasion by mutualistic or pathogenic fungi revealed by RNAseq and metabolite profiling

The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte

(2014) Xi-Hui Xu et al.   Scientific Reports

Endophytes versus biotrophic and necrotrophic pathogens—are fungal lifestyles evolutionarily stable traits?

(2013) Luis Delaye et al.   FUNGAL DIVERSITY

Metabolic Profiling of Chinese Tobacco Leaf of Different Geographical Origins by GC-MS

(2013) Li Zhang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Systems biology and “omics” tools: A cooperation for next-generation mycorrhizal studies

(2013) Alessandra Salvioli et al.   PLANT SCIENCE

Evidence for Biotrophic Lifestyle and Biocontrol Potential of Dark Septate Endophyte Harpophora oryzae to Rice Blast Disease

(2013) Zhen-Zhu Su et al.   PLoS One

Comparative Transcriptome Profiling of the Early Response to Magnaporthe oryzae in Durable Resistant vs Susceptible Rice (Oryza sativa L.) Genotypes

(2012) Paolo Bagnaresi et al.   PLoS One

Ustilago maydis: Dissecting the Molecular Interface between Pathogen and Plant

(2012) Armin Djamei et al.   PLoS Pathogens

Plant-Parasite Coevolution: Bridging the Gap between Genetics and Ecology

(2011) James K. M. Brown et al.   Annual Review of Phytopathology

Cell biology of the plant–powdery mildew interaction

(2011) Ralph Hückelhoven et al.   CURRENT OPINION IN PLANT BIOLOGY

Metabolite Profiling of Angelica gigas from Different Geographical Origins Using1H NMR and UPLC-MS Analyses

(2011) Eun Jin Kim et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Differential effects of herbivory and pathogen infestation on plant population dynamics

(2011) Annette Kolb   PLANT ECOLOGY

Reciprocal Rewards Stabilize Cooperation in the Mycorrhizal Symbiosis

(2011) E. T. Kiers et al.   SCIENCE

Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica

(2011) Alga Zuccaro et al.   PLoS Pathogens

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Fungal carbohydrate support in the ectomycorrhizal symbiosis: a review

(2010) U. Nehls et al.   PLANT BIOLOGY

Common Genetic Pathways Regulate Organ-Specific Infection-Related Development in the Rice Blast Fungus

(2010) S. L. Tucker et al.   PLANT CELL

Tissue-Adapted Invasion Strategies of the Rice Blast FungusMagnaporthe oryzae

(2010) Sylvain Marcel et al.   PLANT CELL

Disruption of Signaling in a Fungal-Grass Symbiosis Leads to Pathogenesis

(2010) C. J. Eaton et al.   PLANT PHYSIOLOGY

What triggers grass endophytes to switch from mutualism to pathogenism?

(2010) Carla J. Eaton et al.   PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Symbiotic competence in Lotus japonicus is affected by plant nitrogen status: transcriptomic identification of genes affected by a new signalling pathway

(2009) Selim Omrane et al.   NEW PHYTOLOGIST

Global and cell-type gene expression profiles in tomato plants colonized by an arbuscular mycorrhizal fungus

(2009) Valentina Fiorilli et al.   NEW PHYTOLOGIST

Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus

(2009) Mike Guether et al.   NEW PHYTOLOGIST

Fungal endophytes: diversity and functional roles

(2009) R. J. Rodriguez et al.   NEW PHYTOLOGIST

Sample preparation for plant metabolomics

(2009) Hye Kyong Kim et al.   PHYTOCHEMICAL ANALYSIS

Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species byMagnaporthe grisea

(2009) David Parker et al.   PLANT JOURNAL

A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

(2009) A. Elizabeth Arnold et al.   SYSTEMATIC BIOLOGY

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY

The tryptophan pathway is involved in the defense responses of rice against pathogenic infection via serotonin production

(2008) Atsushi Ishihara et al.   PLANT JOURNAL

Reprogramming a maize plant: transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis

(2008) Gunther Doehlemann et al.   PLANT JOURNAL

Metabolic Profiles of Lolium perenne Are Differentially Affected by Nitrogen Supply, Carbohydrate Content, and Fungal Endophyte Infection

(2008) S. Rasmussen et al.   PLANT PHYSIOLOGY