Animal snoRNAs and scaRNAs with exceptional structures

R2R - software to speed the depiction of aesthetic consensus RNA secondary structures

(2011) Zasha Weinberg et al.   BMC BIOINFORMATICS

PLEXY: efficient target prediction for box C/D snoRNAs

(2010) Stephanie Kehr et al.   BIOINFORMATICS

Discriminatory power of RNA family models

(2010) C. H. z. Siederdissen et al.   BIOINFORMATICS

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

(2010) Yong Zhang et al.   BMC GENOMICS

Touring Ensembl: A practical guide to genome browsing

(2010) Giulietta M Spudich et al.   BMC GENOMICS

Comparative analysis of eukaryotic U3 snoRNA

(2010) Manja Marz et al.   RNA Biology

RNAsnoop: efficient target prediction for H/ACA snoRNAs

(2009) Hakim Tafer et al.   BIOINFORMATICS

Infernal 1.0: inference of RNA alignments

(2009) E. P. Nawrocki et al.   BIOINFORMATICS

Genome-wide analysis of chicken snoRNAs provides unique implications for the evolution of vertebrate snoRNAs

(2009) Peng Shao et al.   BMC GENOMICS

Evolution of Vault RNAs

(2009) P. F. Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Systematic identification and characterization of chicken ( Gallus gallus ) ncRNAs

(2009) Yong Zhang et al.   NUCLEIC ACIDS RESEARCH

Repertoire of Bovine miRNA and miRNA-Like Small Regulatory RNAs Expressed upon Viral Infection

(2009) Evgeny A. Glazov et al.   PLoS One

Small RNAs derived from snoRNAs

(2009) R. J. Taft et al.   RNA

RNAalifold: improved consensus structure prediction for RNA alignments

(2008) Stephan H Bernhart et al.   BMC BIOINFORMATICS

Genomewide Analysis of Box C/D and Box H/ACA snoRNAs in Chlamydomonas reinhardtii Reveals an Extensive Organization Into Intronic Gene Clusters

(2008) C.-L. Chen et al.   GENETICS

Conservation of small RNA pathways in platypus

(2008) E. P. Murchison et al.   GENOME RESEARCH

A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach

(2008) E. A. Glazov et al.   GENOME RESEARCH

Retroposed SNOfall--A mammalian-wide comparison of platypus snoRNAs

(2008) J. Schmitz et al.   GENOME RESEARCH

Evolution of Spliceosomal snRNA Genes in Metazoan Animals

(2008) Manuela Marz et al.   JOURNAL OF MOLECULAR EVOLUTION

Discovering microRNAs from deep sequencing data using miRDeep

(2008) Marc R Friedländer et al.   NATURE BIOTECHNOLOGY

snoTARGET shows that human orphan snoRNA targets locate close to alternative splice junctions

(2007) Peter S. Bazeley et al.   GENE