4.4 Article

Biogeological Analysis of Desert Varnish Using Portable Raman Spectrometers

Journal

ASTROBIOLOGY
Volume 15, Issue 6, Pages 442-452

Publisher

MARY ANN LIEBERT, INC
DOI: 10.1089/ast.2014.1265

Keywords

-

Funding

  1. Department of Chemistry at the University of Liege
  2. STFC Research Council
  3. UK Space Agency in the UK ExoMars programme
  4. Department of Geology at the University of Leicester
  5. Science and Technology Facilities Council [1237801] Funding Source: researchfish
  6. UK Space Agency [ST/L006103/1, ST/I002677/1] Funding Source: researchfish

Ask authors/readers for more resources

Desert varnishes are thin, dark mineral coatings found on some rocks in arid or semi-arid environments on Earth. Microorganisms may play an active role in their formation, which takes many hundreds of years. Their mineral matrix may facilitate the preservation of organic matter and is therefore of great relevance to martian exploration. Miniaturized Raman spectrometers (which allow nondestructive analysis of the molecular composition of a specimen) will equip rovers in forthcoming planetary exploration missions. In that context, and for the first time, portable Raman spectrometers operating in the green visible (532nm as currently baselined for flight) and in the near-infrared (785nm) were used in this study to investigate the composition (and substrate) of several samples of desert varnish. Rock samples that were suspected (and later confirmed) to be coated with desert varnish were recovered from two sites in the Mojave Desert, USA. The portable spectrometers were operated in flight-representative acquisition modes to identify the key molecular components of the varnish. The results demonstrate that the coatings typically comprise silicate minerals such as quartz, plagioclase feldspars, clays, ferric oxides, and hydroxides and that successful characterization of the samples can be achieved by using flightlike portable spectrometers for both the 532 and 785nm excitation sources. In the context of searching for spectral signatures and identifying molecules that indicate the presence of extant and/or extinct life, we also report the detection of -carotene in some of the samples. Analysis complications caused by the presence of rare earth element photoluminescence (which overlaps with and overwhelms the organic Raman signal when a 785nm laser is employed) are also discussed. Key Words: Desert varnishRaman spectroscopyExoMarsPortable spectrometersPlanetary science. Astrobiology 15, 442-452.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Geology

FOSSILIZATION OF THE EOCENE MONKEYHAIR LATICIFER TREE FROM GEISELTAL, GERMANY: A DEEPER UNDERSTANDING USING MICRO-CT AND PYROLYSIS GC/MS

Victoria E. McCoy, Arnoud Boom, Oliver Wings, Torsten Wappler, Conrad C. Labandeira, Carole T. Gee

Summary: Through modern imaging and chemical analyses, a deeper understanding of the chemical composition and preservation of the fibrous plant material called Affenhaar from the middle Eocene lignites of Geiseltal in Germany has been achieved. The material represents a very rare case of fossil laticifers, and high-resolution X-ray microcomputed tomography has been used for the first time to elucidate the anatomy of tissues within the monkeyhair tree. These fossil laticifers contained natural rubber dominated by cis-1,4-polyisoprene, as well as various triterpenoids, and the vulcanization process most likely occurred during early diagenesis.

PALAIOS (2021)

Article Meteorology & Atmospheric Sciences

Tree-ring oxygen isotopes record a decrease in Amazon dry season rainfall over the past 40 years

Bruno B. L. Cintra, Manuel Gloor, Arnoud Boom, Jochen Schongart, Jessica C. A. Baker, Francisco W. Cruz, Santiago Clerici, Roel J. W. Brienen

Summary: Recent climate observations show that the dry season in the Amazon Basin has become longer and drier over the past four decades, with a possible drying trend not unprecedented in the past 80 years. This trend is linked to a warming Tropical North Atlantic Ocean, resulting in a decrease in dry season rainfall.

CLIMATE DYNAMICS (2022)

Article Astronomy & Astrophysics

Characterization of the Halochromic Gloeocapsin Pigment, a Cyanobacterial Biosignature for Paleobiology and Astrobiology

Yannick J. Lara, Andrea McCann, Cedric Malherbe, Camille Francois, Catherine F. Demoulin, Marie Catherine Sforna, Gauthier Eppe, Edwin De Pauw, Annick Wilmotte, Philippe Jacques, Emmanuelle J. Javaux

Summary: This study identified a gloeocapsin-producing cyanobacteria strain and compared the pigment extracted from the culture with a natural sample. The analysis of the pigment extract provided the molecular formula of gloeocapsin, suggesting it was either inherited from a common ancestor or acquired through lateral gene transfer. This work represents an important step towards understanding the structure and biosynthesis of this enigmatic pigment, and it offers a new biosignature for ancient cyanobacteria.

ASTROBIOLOGY (2022)

Article Ecology

Variability in soil and foliar stable carbon and nitrogen isotope compositions in the winter rainfall biomes of South Africa

Andrew S. Carr, Brian M. Chase, Arnoud Boom, Michael E. Meadows, Javier Medina Sanchez

Summary: This study presents the stable carbon and nitrogen isotope compositions of plants and soils from South Africa's Fynbos and Succulent Karoo biomes and assesses the variability within and between the biomes. The results show that the Succulent Karoo has higher foliar δ13C values, primarily due to the higher abundance of CAM photosynthesis compared to the Fynbos. Additionally, foliar δ15N is significantly higher in the Succulent Karoo, and there is a positive correlation between soil and foliar δ15N. Both soil and foliar δ15N show stronger correlations with climate than δ13C.

JOURNAL OF ARID ENVIRONMENTS (2022)

Article Chemistry, Multidisciplinary

Imaging Metabolites in Agar-Based Bacterial Co-Cultures with Minimal Sample Preparation using a DIUTHAME Membrane in Surface-Assisted Laser Desorption/Ionization Mass Spectrometry

Wendy H. Muller, Andrea McCann, Anthony Arguelles Arias, Cedric Malherbe, Loic Quinton, Edwin De Pauw, Gauthier Eppe

Summary: In this study, a SALDI mass spectrometry imaging (MSI) technique was used to image a co-culture of Pseudomonas and Bacillus bacteria grown on agar. A rapid and easy sample preparation method using DIUTHAME and blotting was proposed. The advantages and limitations of this new sample preparation method are discussed.

CHEMISTRYSELECT (2022)

Article Astronomy & Astrophysics

Fe-Rich Fossil Vents as Mars Analog Samples: Identification of Extinct Chimneys in Miocene Marine Sediments Using Raman Spectroscopy, X-Ray Diffraction, and Scanning Electron Microscopy-Energy Dispersive X-Ray Spectroscopy

Lucas Demaret, Ian B. Hutchinson, Richard Ingley, Howell G. M. Edwards, Nathalie Fagel, Philippe Compere, Emmanuelle J. Javaux, Gauthier Eppe, Cedric Malherbe

Summary: By analyzing an extinct hydrothermal chimney from the Jaroso hydrothermal system in Spain, this study confirmed the microbial colonization features of iron-rich hydrothermal chimneys in marl substrates, demonstrating that Raman spectroscopy is an effective tool for documenting the habitability of ancient hydrothermal environments.

ASTROBIOLOGY (2022)

Article Chemistry, Analytical

Development and validation of an integrated microfluidic device with an in-line Surface Enhanced Raman Spectroscopy (SERS) detection of glyphosate in drinking water

Gauthier Emonds-Alt, Cedric Malherbe, Alice Kasemiire, Hermane T. Avohou, Philippe Hubert, Eric Ziemons, Jean-Christophe M. Monbaliu, Gauthier Eppe

Summary: In this study, a method based on surface enhanced Raman spectroscopy and microfluidic system was developed for the detection of glyphosate and its main breakdown product, AMPA, in tap water. The method showed rapid, sensitive, and automated features and was validated in the experiment.

TALANTA (2022)

Article Plant Sciences

Grapevine leaf MALDI-MS imaging reveals the localisation of a putatively identified sucrose metabolite associated to Plasmopara viticola development

Marisa Maia, Andrea McCann, Cedric Malherbe, Johann Far, Jorge Cunha, Jose Eiras-Dias, Carlos Cordeiro, Gauthier Eppe, Loic Quinton, Andreia Figueiredo, Edwin De Pauw, Marta Sousa Silva

Summary: This study successfully localized the molecules involved in the initial moments of grapevine-Plasmopara viticola interaction using MSI and found their accumulation on the veins. This provides important clues for further understanding the infection mechanism of P. viticola.

FRONTIERS IN PLANT SCIENCE (2022)

Article Environmental Sciences

The Changing Amazon Hydrological Cycle-Inferences From Over 200 Years of Tree-Ring Oxygen Isotope Data

Jessica C. A. Baker, Bruno B. L. Cintra, Manuel Gloor, Arnoud Boom, David Neill, Santiago Clerici, Melanie J. Leng, Gerhard Helle, Roel J. W. Brienen

Summary: Changes in the Amazon hydrological cycle have significant implications for the world's largest tropical forest and its biodiversity. However, the lack of long-term climate data in the region hinders our understanding of recent changes in Amazon hydrology. In this study, researchers analyze tree-ring oxygen isotope chronologies to shed light on hydrological changes in the Amazon over the past two centuries. The results reveal a strong correlation between tree-ring oxygen isotope records and interannual variation in Amazon River discharge and upwind precipitation. The findings suggest that rising sea surface temperatures in the North Atlantic may be the main driver behind the long-term increase in tree-ring oxygen isotope values, while recent decades have seen a reversal of this trend due to the strengthening of the Amazon hydrological cycle.

JOURNAL OF GEOPHYSICAL RESEARCH-BIOGEOSCIENCES (2022)

Article Chemistry, Physical

Macroporous Mannitol Granules Produced by Spray Drying and Sacrificial Templating

Morgane Valentin, Damien Coibion, Benedicte Vertruyen, Cedric Malherbe, Rudi Cloots, Frederic Boschini

Summary: In pharmaceutical applications, macroporous spherical granules of mannitol were successfully prepared using a spray-drying process with polystyrene beads as a sacrificial templating agent. The presence of PS beads was found to favor the formation of the alpha mannitol polymorph. Different atomization configurations in the pilot-scale spray dryer resulted in different distributions of granule size and porosity.

MATERIALS (2023)

Article Biodiversity Conservation

Simulating carbon accumulation and loss in the central Congo peatlands

Dylan M. Young, Andy J. Baird, Paul J. Morris, Greta C. Dargie, Y. Emmanuel Mampouya Wenina, Mackline Mbemba, Arnoud Boom, Peter Cook, Richard Betts, Eleanor Burke, Yannick E. Bocko, Sarah Chadburn, Dafydd E. Crabtree, Bart Crezee, Corneille E. N. Ewango, Yannick Garcin, Selena Georgiou, Nicholas T. Girkin, Pauline Gulliver, Donna Hawthorne, Suspense A. Ifo, Ian T. Lawson, Susan E. Page, A. Jonay Jovani-Sancho, Enno Schefuss, Matteo Sciumbata, Sofie Sjogersten, Simon L. Lewis

Summary: Peatlands in the central Congo Basin have accumulated carbon over millennia. A new model reveals the relationship between the age and depth of peat and identifies two key controls on peat accumulation. The study also highlights the catastrophic loss of peat carbon that can occur due to changes in rainfall.

GLOBAL CHANGE BIOLOGY (2023)

Article Spectroscopy

Raman analyses of Al and Fe/Mg-rich clays: Challenges and possibilities for planetary missions

Lucas Demaret, Hannah N. N. Lerman, Melissa McHugh, Ian B. B. Hutchinson, Nathalie Fagel, Gauthier Eppe, Cedric Malherbe

Summary: Clays on Mars indicate multiple episodes of water activity, especially in the early period. Analyzing clay samples from Germany can provide guidance for Martian exploration missions using miniaturized Raman instruments. Raman signatures of kaolinite and various types of smectite were identified, and accessory minerals in the clay matrix were also detected.

JOURNAL OF RAMAN SPECTROSCOPY (2023)

Article Chemistry, Analytical

SERS nanotags for folate receptor α detection at the single cell level: discrimination of overexpressing cells and potential for live cell applications

Alexandre Verdin, Sian Sloan-Dennison, Cedric Malherbe, Duncan Graham, Gauthier Eppe

Summary: In this study, we successfully achieved high specific targeting and measurement of folate receptor alpha (FRα) in cancer cells by building nanotags based on nanoparticles. The PERS response of the nanotags was positively correlated with the expression level of FRα, enabling the discrimination of different expression levels of cancer cells. Moreover, due to the biocompatibility of the nanotags, measurements could be performed on live cells, providing flexibility for experimental conditions.

ANALYST (2022)

Article Forestry

Paired analysis of tree ring width and carbon isotopes indicates when controls on tropical tree growth change from light to water limitations

Roel Brienen, Gerhard Helle, Thijs Pons, Arnoud Boom, Manuel Gloor, Peter Groenendijk, Santiago Clerici, Melanie Leng, Christopher Jones

Summary: The study finds that the limitations to tree growth in closed-canopy forests can vary depending on the environment, with understory trees being limited by light and canopy trees being limited by drought. By analyzing ring width and carbon isotopes, the study shows that light is the main limiting factor for understory growth, while drought is the main limiting factor for (sub)canopy growth.

TREE PHYSIOLOGY (2021)

Review Spectroscopy

Surface-assisted laser desorption/ionization mass spectrometry imaging: A review

Wendy H. Mueller, Alexandre Verdin, Edwin De Pauw, Cedric Malherbe, Gauthier Eppe

Summary: Surface-assisted laser desorption/ionization mass spectrometry (SALDI-MS) is a technique that uses nanostructured substrates to promote the desorption/ionization of analytes, allowing for both untargeted and targeted analysis. This review focuses on SALDI-MS imaging (SALDI-MSI), discussing the nomenclature, fundamental mechanisms, analytical strategies, and applications in various fields. SALDI-MSI has strengths and limitations, but shows promising prospects for future development.

MASS SPECTROMETRY REVIEWS (2022)

No Data Available