Towards clinical applications of selected reaction monitoring for plasma protein biomarker studies

Pulsed Multiple Reaction Monitoring Approach to Enhancing Sensitivity of a Tandem Quadrupole Mass Spectrometer

(2011) Mikhail E. Belov et al.   ANALYTICAL CHEMISTRY

Serum Apolipoprotein AI and B Are Stronger Biomarkers of Diabetic Retinopathy Than Traditional Lipids

(2011) M. B. Sasongko et al.   DIABETES CARE

Prostate Cancer Incidence and Disease-Specific Survival of Men with Initial Prostate-Specific Antigen Less Than 3.0ng/ml Who Are Participating in ERSPC Rotterdam

(2011) Meelan Bul et al.   EUROPEAN UROLOGY

Plasma Clusterin and the Risk of Alzheimer Disease

(2011) Elisabeth M. C. Schrijvers   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Selected reaction monitoring applied to proteomics

(2011) Sebastien Gallien et al.   JOURNAL OF MASS SPECTROMETRY

Serum Clusterin Levels Are Not Increased in Presymptomatic Alzheimer’s Disease

(2011) Linda IJsselstijn et al.   JOURNAL OF PROTEOME RESEARCH

In-Depth Proteomics of Ovarian Cancer Ascites: Combining Shotgun Proteomics and Selected Reaction Monitoring Mass Spectrometry

(2011) Sarah Elschenbroich et al.   JOURNAL OF PROTEOME RESEARCH

Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry

(2011) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease

(2011) Terri A Addona et al.   NATURE BIOTECHNOLOGY

mProphet: automated data processing and statistical validation for large-scale SRM experiments

(2011) Lukas Reiter et al.   NATURE METHODS

C-Reactive Protein and High-Sensitivity C-Reactive Protein: An Update for Clinicians

(2011) Elizabeth B. Windgassen et al.   POSTGRADUATE MEDICINE

Mutant proteins as cancer-specific biomarkers

(2011) Q. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic quantification of peptides/proteins in urine using selected reaction monitoring

(2011) Nathalie Selevsek et al.   PROTEOMICS

Evaluation of absolute peptide quantitation strategies using selected reaction monitoring

(2011) James Campbell et al.   PROTEOMICS

Comparative Quantitation of Aberrant Glycoforms by Lectin-Based Glycoprotein Enrichment Coupled with Multiple-Reaction Monitoring Mass Spectrometry

(2010) Yeong Hee Ahn et al.   ANALYTICAL CHEMISTRY

Simultaneous Analysis of Glycosylated and Sialylated Prostate-Specific Antigen Revealing Differential Distribution of Glycosylated Prostate-Specific Antigen Isoforms in Prostate Cancer Tissues

(2010) Yan Li et al.   ANALYTICAL CHEMISTRY

Association of Plasma Clusterin Concentration With Severity, Pathology, and Progression in Alzheimer Disease

(2010) Madhav Thambisetty et al.   ARCHIVES OF GENERAL PSYCHIATRY

Low Clusterin Levels in High-Density Lipoprotein Associate With Insulin Resistance, Obesity, and Dyslipoproteinemia

(2010) Andrew N. Hoofnagle et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

(2010) Brendan MacLean et al.   BIOINFORMATICS

Simultaneous Quantification of Apolipoprotein A-I and Apolipoprotein B by Liquid-Chromatography-Multiple- Reaction-Monitoring Mass Spectrometry

(2010) S. A. Agger et al.   CLINICAL CHEMISTRY

Monoclonal antibodies in the treatment of metastatic colorectal cancer: A review

(2010) Jolien Tol et al.   CLINICAL THERAPEUTICS

Clusterin expression is associated with decreased disease-free survival of patients with colorectal carcinomas

(2010) Maximino Redondo et al.   HISTOPATHOLOGY

Quantitative assay for six potential breast cancer biomarker peptides in human serum by liquid chromatography coupled to tandem mass spectrometry

(2010) Irene van den Broek et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Quantitative assay for bradykinin in rat plasma by liquid chromatography coupled to tandem mass spectrometry

(2010) Elena Baralla et al.   JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS

Combination of Improved18O Incorporation and Multiple Reaction Monitoring: A Universal Strategy for Absolute Quantitative Verification of Serum Candidate Biomarkers of Liver Cancer

(2010) Yan Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Platform for Establishing Interlaboratory Reproducibility of Selected Reaction Monitoring-Based Mass Spectrometry Peptide Assays

(2010) A. Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Combinatorial Peptide Libraries Facilitate Development of Multiple Reaction Monitoring Assays for Low-Abundance Proteins

(2010) Andrei P. Drabovich et al.   JOURNAL OF PROTEOME RESEARCH

Targeted In-Gel MRM: A Hypothesis Driven Approach for Colorectal Cancer Biomarker Discovery in Human Feces

(2010) Ching-Seng Ang et al.   JOURNAL OF PROTEOME RESEARCH

Serum Degradome Markers for the Detection of Breast Cancer

(2010) Annemieke W. J. van Winden et al.   JOURNAL OF PROTEOME RESEARCH

On the Development of Plasma Protein Biomarkers

(2010) Silvia Surinova et al.   JOURNAL OF PROTEOME RESEARCH

Mass Spectrometric Discovery and Selective Reaction Monitoring (SRM) of Putative Protein Biomarker Candidates in First Trimester Trisomy 21 Maternal Serum

(2010) Mary F Lopez et al.   JOURNAL OF PROTEOME RESEARCH

Clinical assessment incorporating a personal genome

(2010) Euan A Ashley et al.   LANCET

BCR-ABL tyrosine kinase inhibitors in the treatment of Philadelphia chromosome positive chronic myeloid leukemia: A review

(2010) Xin An et al.   LEUKEMIA RESEARCH

The Evolving Role of Monoclonal Antibodies in Colorectal Cancer: Early Presumptions and Impact on Clinical Trial Development

(2010) C. Eng   ONCOLOGIST

High Plasma TIMP-1 and Serum CEA Levels during Combination Chemotherapy for Metastatic Colorectal Cancer Are Significantly Associated with Poor Outcome

(2010) Bahir Aldulaymi et al.   ONCOLOGY

Patients with ovarian carcinoma excrete different altered levels of urine CD59, kininogen-1 and fragments of inter-alpha-trypsin inhibitor heavy chain H4 and albumin

(2010) Siti S Abdullah-Soheimi et al.   Proteome Science

Development of selected reaction monitoring-MS methodology to measure peptide biomarkers in prostate cancer

(2010) Anastasia K. Yocum et al.   PROTEOMICS

Proteomic biomarkers for overall and progression-free survival in ovarian cancer patients

(2010) Estrid Høgdall et al.   Proteomics Clinical Applications

The absolute quantification of eight inter-α-trypsin inhibitor heavy chain 4 (ITIH4)-derived peptides in serum from breast cancer patients

(2010) Irene van den Broek et al.   Proteomics Clinical Applications

Multiplex assays for biomarker research and clinical application: Translational science coming of age

(2010) Qin Fu et al.   Proteomics Clinical Applications

Sensitive liquid chromatography/tandem mass spectrometry assay for absolute quantification of ITIH4-derived putative biomarker peptides in clinical serum samples

(2010) Irene van den Broek et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Prostate-specific antigen: An evolving role in diagnosis, monitoring, and treatment evaluation in prostate cancer

(2010) Heather Payne et al.   UROLOGIC ONCOLOGY-SEMINARS AND ORIGINAL INVESTIGATIONS

Absolute Quantification of Potential Cancer Markers in Clinical Tissue Homogenates Using Multiple Reaction Monitoring on a Hybrid Triple Quadrupole/Linear Ion Trap Tandem Mass Spectrometer

(2009) Leroi V. DeSouza et al.   ANALYTICAL CHEMISTRY

Reference Measurement Procedure Development for C-Reactive Protein in Human Serum

(2009) Eric L. Kilpatrick et al.   ANALYTICAL CHEMISTRY

Multiple Reaction Monitoring Cubed for Protein Quantification at the Low Nanogram/Milliliter Level in Nondepleted Human Serum

(2009) T. Fortin et al.   ANALYTICAL CHEMISTRY

C-reactive protein and ovarian cancer: a prospective study nested in three cohorts (Sweden, USA, Italy)

(2009) Eva Lundin et al.   CANCER CAUSES & CONTROL

Interleukin-33 Prevents Apoptosis and Improves Survival After Experimental Myocardial Infarction Through ST2 Signaling

(2009) Kenjiro Seki et al.   Circulation-Heart Failure

Inter-α-trypsin inhibitor heavy chain 4 is a novel marker of acute ischemic stroke

(2009) Rajpal S. Kashyap et al.   CLINICA CHIMICA ACTA

The Bottleneck in the Cancer Biomarker Pipeline and Protein Quantification through Mass Spectrometry-Based Approaches: Current Strategies for Candidate Verification

(2009) S. Makawita et al.   CLINICAL CHEMISTRY

Automated Detection of Inaccurate and Imprecise Transitions in Peptide Quantification by Multiple Reaction Monitoring Mass Spectrometry

(2009) S. E. Abbatiello et al.   CLINICAL CHEMISTRY

The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum

(2009) N. L. Anderson   CLINICAL CHEMISTRY

Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry

(2009) E. Kuhn et al.   CLINICAL CHEMISTRY

Perspectives of targeted mass spectrometry for protein biomarker verification

(2009) Ruth Hüttenhain et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Inflammatory, Hemostatic, and Other Novel Biomarkers for Diabetic Retinopathy: The Multi-Ethnic Study of Atherosclerosis

(2009) T. T. Nguyen et al.   DIABETES CARE

Serum myeloperoxidase level predicts reperfusion in patients with myocardial infarction receiving thrombolytic therapy

(2009) Bilgehan Karadag et al.   HEART AND VESSELS

Quantitative Analysis of an Aberrant Glycoform of TIMP1 from Colon Cancer Serum by L-PHA-Enrichment and SISCAPA with MRM Mass Spectrometry

(2009) Yeong Hee Ahn et al.   JOURNAL OF PROTEOME RESEARCH

Expediting the Development of Targeted SRM Assays: Using Data from Shotgun Proteomics to Automate Method Development

(2009) Amol Prakash et al.   JOURNAL OF PROTEOME RESEARCH

Absolute Quantification of C-Reactive Protein in Human Plasma Derived from Patients with Epithelial Ovarian Cancer Utilizing Protein Cleavage Isotope Dilution Mass Spectrometry

(2009) D. Keith Williams et al.   JOURNAL OF PROTEOME RESEARCH

MaRiMba: A Software Application for Spectral Library-Based MRM Transition List Assembly

(2009) Carly A. Sherwood et al.   JOURNAL OF PROTEOME RESEARCH

Development of High-Throughput Chemical Extraction Techniques and Quantitative HPLC-MS/MS (SRM) Assays for Clinically Relevant Plasma Proteins

(2009) Chris Barton et al.   JOURNAL OF PROTEOME RESEARCH

Verification of Biomarkers for Diabetic Retinopathy by Multiple Reaction Monitoring

(2009) Kyunggon Kim et al.   JOURNAL OF PROTEOME RESEARCH

C-reactive protein concentration and risk of coronary heart disease, stroke, and mortality: an individual participant meta-analysis

(2009)   LANCET

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

(2009) Michael A. Kuzyk et al.   MOLECULAR & CELLULAR PROTEOMICS

An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers

(2009) Jeffrey R. Whiteaker et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

(2009) Hasmik Keshishian et al.   MOLECULAR & CELLULAR PROTEOMICS

How specific is my SRM?: The issue of precursor and product ion redundancy

(2009) Jamie Sherman et al.   PROTEOMICS

Recent progress in selected reaction monitoring MS-driven plasma protein biomarker analysis

(2009) Chi-Li Chiu et al.   Bioanalysis

Proteomic techniques identify urine proteins that differentiate patients with interstitial cystitis from asymptomatic control subjects

(2008) Maria P. Canter et al.   AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY

Quantification of NTproBNP in Rat Serum Using Immunoprecipitation and LC/MS/MS:  a Biomarker of Drug-Induced Cardiac Hypertrophy

(2008) Michael Berna et al.   ANALYTICAL CHEMISTRY

Combined Statin and Niacin Therapy Remodels the High-Density Lipoprotein Proteome

(2008) Pattie S. Green et al.   CIRCULATION

Vitronectin Concentrations Predict Risk in Patients Undergoing Coronary Stenting

(2008) Wolfgang Derer et al.   Circulation-Cardiovascular Interventions

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Multiple Reaction Monitoring of mTRAQ-Labeled Peptides Enables Absolute Quantification of Endogenous Levels of a Potential Cancer Marker in Cancerous and Normal Endometrial Tissues

(2008) Leroi V. DeSouza et al.   JOURNAL OF PROTEOME RESEARCH

Use of an Immunoaffinity-Mass Spectrometry-based Approach for the Quantification of Protein Biomarkers from Serum Samples of Lung Cancer Patients

(2008) Gordon R. Nicol et al.   MOLECULAR & CELLULAR PROTEOMICS

MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions

(2008) Jennifer A. Mead et al.   MOLECULAR & CELLULAR PROTEOMICS

Clinical Quantitation of Prostate-specific Antigen Biomarker in the Low Nanogram/Milliliter Range by Conventional Bore Liquid Chromatography-Tandem Mass Spectrometry (Multiple Reaction Monitoring) Coupling and Correlation with ELISA Tests

(2008) Tanguy Fortin et al.   MOLECULAR & CELLULAR PROTEOMICS

The Multifunctional Protein Glyceraldehyde-3-Phosphate Dehydrogenase Is Both Regulated and Controls Colony-Stimulating Factor-1 Messenger RNA Stability in Ovarian Cancer

(2008) Y. Zhou et al.   MOLECULAR CANCER RESEARCH

Selected reaction monitoring for quantitative proteomics: a tutorial

(2008) Vinzenz Lange et al.   Molecular Systems Biology

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

(2008) Heather R. Christofk et al.   NATURE

A database of mass spectrometric assays for the yeast proteome

(2008) Paola Picotti et al.   NATURE METHODS

Mesothelin targeted cancer immunotherapy

(2007) Raffit Hassan et al.   EUROPEAN JOURNAL OF CANCER

Targeted therapy in chronic myeloid leukemia

(2007) Elias Jabbour et al.   Expert Review of Anticancer Therapy