Rapid and sensitive profiling and quantification of the human cell line proteome by LC-MS/MS without prefractionation

A combinatorial approach to the peptide feature matching problem for label-free quantification

(2013) Hao Lin et al.   BIOINFORMATICS

A Fast Workflow for Identification and Quantification of Proteomes

(2013) Chen Ding et al.   MOLECULAR & CELLULAR PROTEOMICS

In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis

(2012) Alba Cristobal et al.   ANALYST

The Nedd8-Activating Enzyme Inhibitor MLN4924 Induces Autophagy and Apoptosis to Suppress Liver Cancer Cell Growth

(2012) Z. Luo et al.   CANCER RESEARCH

MeCAT peptide labeling for the absolute quantification of proteins by 2D-LC-ICP-MS

(2012) Diego Esteban-Fernández et al.   JOURNAL OF MASS SPECTROMETRY

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

(2012) Timo Glatter et al.   JOURNAL OF PROTEOME RESEARCH

Label-free Quantification and Shotgun Analysis of Complex Proteomes by One-dimensional SDS-PAGE/NanoLC-MS

(2012) Violette Gautier et al.   MOLECULAR & CELLULAR PROTEOMICS

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

(2012) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Pyruvate kinase M2 activators promote tetramer formation and suppress tumorigenesis

(2012) Dimitrios Anastasiou et al.   Nature Chemical Biology

Online Nanoflow Reversed Phase-Strong Anion Exchange-Reversed Phase Liquid Chromatography–Tandem Mass Spectrometry Platform for Efficient and In-Depth Proteome Sequence Analysis of Complex Organisms

(2011) Feng Zhou et al.   ANALYTICAL CHEMISTRY

Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)

(2011) Genna L. Andrews et al.   ANALYTICAL CHEMISTRY

Ultra-High-Pressure RPLC Hyphenated to an LTQ-Orbitrap Velos Reveals a Linear Relation between Peak Capacity and Number of Identified Peptides

(2011) Thomas Köcher et al.   ANALYTICAL CHEMISTRY

Human proteome analysis by using reversed phase monolithic silica capillary columns with enhanced sensitivity

(2011) Mio Iwasaki et al.   JOURNAL OF CHROMATOGRAPHY A

Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation

(2011) Suman S. Thakur et al.   MOLECULAR & CELLULAR PROTEOMICS

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

The quantitative proteome of a human cell line

(2011) M. Beck et al.   Molecular Systems Biology

Mining the malignant ascites proteome for pancreatic cancer biomarkers

(2011) Hari Kosanam et al.   PROTEOMICS

One-Dimensional Capillary Liquid Chromatographic Separation Coupled with Tandem Mass Spectrometry Unveils theEscherichia coliProteome on a Microarray Scale

(2010) Mio Iwasaki et al.   ANALYTICAL CHEMISTRY

NEDD8-Targeting Drug MLN4924 Elicits DNA Rereplication by Stabilizing Cdt1 in S Phase, Triggering Checkpoint Activation, Apoptosis, and Senescence in Cancer Cells

(2010) J. J. Lin et al.   CANCER RESEARCH

Online Nanoflow RP−RP-MS Reveals Dynamics of Multicomponent Ku Complex in Response to DNA Damage

(2010) Feng Zhou et al.   JOURNAL OF PROTEOME RESEARCH

Value of Using Multiple Proteases for Large-Scale Mass Spectrometry-Based Proteomics

(2010) Danielle L. Swaney et al.   JOURNAL OF PROTEOME RESEARCH

Chemo-Resistant Protein Expression Pattern of Glioblastoma Cells (A172) to Perillyl Alcohol

(2010) Juliana de Saldanha da Gama Fischer et al.   JOURNAL OF PROTEOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Optimizing the peak capacity per unit time in one-dimensional and off-line two-dimensional liquid chromatography for the separation of complex peptide samples

(2009) Sebastiaan Eeltink et al.   JOURNAL OF CHROMATOGRAPHY A

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

(2009) Jesper V. Olsen et al.   MOLECULAR & CELLULAR PROTEOMICS

Multiplexed Proteomics Mapping of Yeast RNA Polymerase II and III Allows Near-Complete Sequence Coverage and Reveals Several Novel Phosphorylation Sites

(2008) Shabaz Mohammed et al.   ANALYTICAL CHEMISTRY

Multidimensional LC Separations in Shotgun Proteomics

(2008) Akira Motoyama et al.   ANALYTICAL CHEMISTRY