C-terminomics: Targeted analysis of natural and posttranslationally modified protein and peptide C-termini

Programmed Translational Readthrough Generates Antiangiogenic VEGF-Ax

(2014) Sandeepa M. Eswarappa et al.   CELL

C-terminomics Screen for Natural Substrates of Cytosolic Carboxypeptidase 1 Reveals Processing of Acidic Protein C termini

(2014) Sebastian Tanco et al.   MOLECULAR & CELLULAR PROTEOMICS

N-terminal Proteomics and Ribosome Profiling Provide a Comprehensive View of the Alternative Translation Initiation Landscape in Mice and Men

(2014) Petra Van Damme et al.   MOLECULAR & CELLULAR PROTEOMICS

The first pilot project of the consortium for top-down proteomics: A status report

(2014) Xibei Dang et al.   PROTEOMICS

Structural characterization of recombinant alpha-1-antitrypsin expressed in a human cell line

(2013) Zihao Wang et al.   ANALYTICAL BIOCHEMISTRY

Approach for Identification and Quantification of C-Terminal Peptides: Incorporation of Isotopic Arginine Labeling Based on Oxazolone Chemistry

(2013) Minbo Liu et al.   ANALYTICAL CHEMISTRY

Structures and target recognition modes of PDZ domains: recurring themes and emerging pictures

(2013) Fei Ye et al.   BIOCHEMICAL JOURNAL

Contemporary positional proteomics strategies to study protein processing

(2013) Kim Plasman et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Protein TAILS: when termini tell tales of proteolysis and function

(2013) Philipp F Lange et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Complete Protein Characterization Using Top-Down Mass Spectrometry and Ultraviolet Photodissociation

(2013) Jared B. Shaw et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Proteome-derived Peptide Libraries to Study the Substrate Specificity Profiles of Carboxypeptidases

(2013) Sebastian Tanco et al.   MOLECULAR & CELLULAR PROTEOMICS

Prenylation: From bacteria to eukaryotes

(2013) E. S. Marakasova et al.   MOLECULAR BIOLOGY

Proteoform: a single term describing protein complexity

(2013) Lloyd M Smith et al.   NATURE METHODS

Structure and function ofEscherichia coliRimK, an ATP-grasp fold,l-glutamyl ligase enzyme

(2013) Gengxiang Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

(2013) Joshua G Dunn et al.   eLife

C-Terminal sequencing of protein by MALDI mass spectrometry through the specific derivatization of the α-carboxyl group with 3-aminopropyltris-(2,4,6-trimethoxyphenyl)phosphonium bromide

(2012) Chihiro Nakajima et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Mass spectrometry-based sequencing of protein C-terminal peptide using α-carboxyl group-specific derivatization and COOH capturing

(2012) Chihiro Nakajima et al.   ANALYTICAL BIOCHEMISTRY

Enriching C-terminal peptide from endopeptidase ArgC digest for protein C-terminal analysis

(2012) Hiroki Kuyama et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Non-canonical translation in RNA viruses

(2012) A. E. Firth et al.   JOURNAL OF GENERAL VIROLOGY

Elucidating the Role of C-Terminal Post-Translational Modifications Using Protein Semisynthesis Strategies: α-Synuclein Phosphorylation at Tyrosine 125

(2012) Mirva Hejjaoui et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Enhanced identification of peptides lacking basic residues by LC-ESI-MS/MS analysis of singly charged peptides

(2012) Martin L. Biniossek et al.   PROTEOMICS

Profiling protease activities by dynamic proteomics workflows

(2012) Diana Klingler et al.   PROTEOMICS

Mass spectrometry-based proteomics strategies for protease cleavage site identification

(2012) Bart H. J. van den Berg et al.   PROTEOMICS

Chemoenzymatic Labeling of Protein C-Termini for Positive Selection of C-Terminal Peptides

(2011) Guoqiang Xu et al.   ACS Chemical Biology

C-terminal de novo sequencing of peptides using oxazolone-based derivatization with bromine signature

(2011) Jong-Seo Kim et al.   ANALYTICAL BIOCHEMISTRY

Human and mouse granzyme M display divergent and species-specific substrate specificities

(2011) Stefanie A.H. de Poot et al.   BIOCHEMICAL JOURNAL

Large-scale analysis of phosphorylation site occupancy in eukaryotic proteins

(2011) R. Shyama Prasad Rao et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Fine-tuning p53 activity through C-terminal modification significantly contributes to HSC homeostasis and mouse radiosensitivity

(2011) Y. V. Wang et al.   GENES & DEVELOPMENT

TopFIND, a knowledgebase linking protein termini with function

(2011) Philipp F Lange et al.   NATURE METHODS

Post-translational regulation of the microtubule cytoskeleton: mechanisms and functions

(2011) Carsten Janke et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A mass spectrometry-based method to screen for α-amidated peptides

(2011) Zhenming An et al.   PROTEOMICS

Proteomic profiling of proteases: tools for granzyme degradomics

(2010) Robert van Domselaar et al.   Expert Review of Proteomics

Substrate Specificity of Human Carboxypeptidase A6

(2010) Peter J. Lyons et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of the Substrate Specificity of Human Carboxypeptidase A4 and Implications for a Role in Extracellular Peptide Processing

(2010) Sebastian Tanco et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A new chemical approach to differentiate carboxy terminal peptide fragments in cyanogen bromide digests of proteins

(2010) P.P. Moerman et al.   Journal of Proteomics

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

(2010) Oded Kleifeld et al.   NATURE BIOTECHNOLOGY

Complementary positional proteomics for screening substrates of endo- and exoproteases

(2010) Petra Van Damme et al.   NATURE METHODS

Proteome-wide analysis of protein carboxy termini: C terminomics

(2010) Oliver Schilling et al.   NATURE METHODS

MS-driven protease substrate degradomics

(2010) Francis Impens et al.   PROTEOMICS

Accurate mass comparison coupled with two endopeptidases enables identification of protein termini

(2010) Taro Kishimoto et al.   PROTEOMICS

p53 post-translational modification: deregulated in tumorigenesis

(2010) Chao Dai et al.   TRENDS IN MOLECULAR MEDICINE

Protein carboxyl methylation and the biochemistry of memory

(2009) Zhu Li et al.   BIOLOGICAL CHEMISTRY

Global Analysis of the Mitochondrial N-Proteome Identifies a Processing Peptidase Critical for Protein Stability

(2009) F.-Nora Vögtle et al.   CELL

The KDEL receptor: New functions for an old protein

(2009) Mirco Capitani et al.   FEBS LETTERS

A new approach for detecting C-terminal amidation of proteins and peptides by mass spectrometry in conjunction with chemical derivatization

(2009) Hiroki Kuyama et al.   PROTEOMICS

De novosequencing of peptides by MS/MS

(2009) Joerg Seidler et al.   PROTEOMICS

The specific isolation of C-terminal peptides of proteins through a transamination reaction and its advantage for introducing functional groups into the peptide

(2009) Kazuhiro Sonomura et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

The Glycosylphosphatidylinositol Anchor: A Complex Membrane-Anchoring Structure for Proteins†

(2008) Margot G. Paulick et al.   BIOCHEMISTRY

Detection of C-terminal peptide of proteins using isotope coding strategies

(2008) S JULKA et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Peptidomics ofCpefat/fatmouse brain regions: implications for neuropeptide processing

(2008) Xin Zhang et al.   JOURNAL OF NEUROCHEMISTRY

An Optimized MALDI Mass Spectrometry Method for Improved Detection of Lysine/Arginine/Histidine Free Peptides

(2008) Manuela Argentini et al.   JOURNAL OF PROTEOME RESEARCH

Terminal proteomics: N- and C-terminal analyses for high-fidelity identification of proteins using MS

(2008) Takashi Nakazawa et al.   PROTEOMICS

A simple and highly successful C-terminal sequence analysis of proteins by mass spectrometry

(2008) Hiroki Kuyama et al.   PROTEOMICS