Assessment of reproducibility in depletion and enrichment workflows for plasma proteomics using label-free quantitative data-independent LC-MS

More than 100,000 Detectable Peptide Species Elute in Single Shotgun Proteomics Runs but the Majority is Inaccessible to Data-Dependent LC−MS/MS

(2011) Annette Michalski et al.   JOURNAL OF PROTEOME RESEARCH

Characterization of the human serum depletome by label-free shotgun proteomics

(2011) Theodoros A. Koutroukides et al.   JOURNAL OF SEPARATION SCIENCE

A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas

(2011) Terry Farrah et al.   MOLECULAR & CELLULAR PROTEOMICS

High Abundance Proteins Depletion vs Low Abundance Proteins Enrichment: Comparison of Methods to Reduce the Plasma Proteome Complexity

(2011) Renato Millioni et al.   PLoS One

A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery

(2011) Amit Kumar Yadav et al.   PLoS One

Differential profiling of breast cancer plasma proteome by isotope-coded affinity tagging method reveals biotinidase as a breast cancer biomarker

(2010) Un-Beom Kang et al.   BMC CANCER

Hepatocyte growth factor activator (HGFA): a serine protease that links tissue injury to activation of hepatocyte growth factor

(2010) Keiji Miyazawa   FEBS Journal

Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics

(2010) Chengjian Tu et al.   JOURNAL OF PROTEOME RESEARCH

Plucking, pillaging and plundering proteomes with combinatorial peptide ligand libraries

(2009) Pier Giorgio Righetti et al.   JOURNAL OF CHROMATOGRAPHY A

A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches

(2009) Vibhuti J. Patel et al.   JOURNAL OF PROTEOME RESEARCH

Assessment of the Reproducibility of Random Hexapeptide Peptide Library-Based Protein Normalization

(2009) Ravi C. Dwivedi et al.   JOURNAL OF PROTEOME RESEARCH

Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: The more the better?

(2009) Stéphane Roche et al.   Journal of Proteomics

The dynamic range problem in the analysis of the plasma proteome

(2009) Glen L. Hortin et al.   Journal of Proteomics

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

(2009) Guo-Zhong Li et al.   PROTEOMICS

Expression of tissue and plasma kallikreins and kinin B1 and B2 receptors in lung cancer

(2008) Jessica Chee et al.   BIOLOGICAL CHEMISTRY

High-Abundance Polypeptides of the Human Plasma Proteome Comprising the Top 4 Logs of Polypeptide Abundance

(2008) G. L. Hortin et al.   CLINICAL CHEMISTRY

Expression of apolipoprotein C-IV is regulated by Ku antigen/peroxisome proliferator-activated receptor γ complex and correlates with liver steatosis

(2008) Eun Kim et al.   JOURNAL OF HEPATOLOGY

Targeted proteomic strategy for clinical biomarker discovery

(2008) Ralph Schiess et al.   Molecular Oncology