ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses

PTMScout, a Web Resource for Analysis of High Throughput Post-translational Proteomics Studies

(2010) Kristen M. Naegle et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolution of Characterized Phosphorylation Sites in Budding Yeast

(2010) A. N. Nguyen Ba et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular characterization of the evolution of phagosomes

(2010) Jonathan Boulais et al.   Molecular Systems Biology

HTAPP: High-throughput autonomous proteomic pipeline

(2010) Kebing Yu et al.   PROTEOMICS

Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data

(2009) N. Gehlenborg et al.   BIOINFORMATICS

Qupe—a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments

(2009) Stefan P. Albaum et al.   BIOINFORMATICS

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

(2009) Hong Li et al.   MOLECULAR & CELLULAR PROTEOMICS

In SilicoAnalysis of Phosphoproteome Data Suggests a Rich-get-richer Process of Phosphosite Accumulation over Evolution

(2009) Nozomu Yachie et al.   MOLECULAR & CELLULAR PROTEOMICS

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

(2009) Douglas J Slotta et al.   NATURE BIOTECHNOLOGY

Dissecting the Signaling Events That Impact Classical Nuclear Import and Target Nuclear Transport Factors

(2009) Mohamed Kodiha et al.   PLoS One

LymPHOS: Design of a phosphosite database of primary human T cells

(2009) David Ovelleiro et al.   PROTEOMICS

PeptideDepot: Flexible relational database for visual analysis of quantitative proteomic data and integration of existing protein information

(2009) Kebing Yu et al.   PROTEOMICS

Weak functional constraints on phosphoproteomes

(2009) Christian R. Landry et al.   TRENDS IN GENETICS

Evolution of Phosphoregulation: Comparison of Phosphorylation Patterns across Yeast Species

(2009) Pedro Beltrao et al.   PLOS BIOLOGY

Discovery of phosphorylation motif mixtures in phosphoproteomics data

(2008) Anna Ritz et al.   BIOINFORMATICS

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

Artifactual Sulfation of Silver-stained Proteins

(2008) Marlene Gharib et al.   MOLECULAR & CELLULAR PROTEOMICS

PhosphoPep—a database of protein phosphorylation sites in model organisms

(2008) Bernd Bodenmiller et al.   NATURE BIOTECHNOLOGY

Human Proteinpedia enables sharing of human protein data

(2008) Suresh Mathivanan et al.   NATURE BIOTECHNOLOGY

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Nuclear Export Signal Consensus Sequences Defined Using a Localization-Based Yeast Selection System

(2008) Shunichi Kosugi et al.   TRAFFIC