PhosSA: Fast and accurate phosphorylation site assignment algorithm for mass spectrometry data

CPhos: A program to calculate and visualize evolutionarily conserved functional phosphorylation sites

(2012) Boyang Zhao et al.   PROTEOMICS

A high performance multiple sequence alignment system for pyrosequencing reads from multiple reference genomes

(2011) Fahad Saeed et al.   JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

Universal and Confident Phosphorylation Site Localization Using phosphoRS

(2011) Thomas Taus et al.   JOURNAL OF PROTEOME RESEARCH

Glycoprotein Capture and Quantitative Phosphoproteomics Indicate Coordinated Regulation of Cell Migration upon Lysophosphatidic Acid Stimulation

(2010) Nina Mäusbacher et al.   MOLECULAR & CELLULAR PROTEOMICS

Evolution of Characterized Phosphorylation Sites in Budding Yeast

(2010) A. N. Nguyen Ba et al.   MOLECULAR BIOLOGY AND EVOLUTION

SLoMo: Automated Site Localization of Modifications from ETD/ECD Mass Spectra

(2009) Christopher M. Bailey et al.   JOURNAL OF PROTEOME RESEARCH

OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results

(2009) Harald Barsnes et al.   PROTEOMICS

Discovery of phosphorylation motif mixtures in phosphoproteomics data

(2008) Anna Ritz et al.   BIOINFORMATICS

cPLA2phosphorylation at serine-515 and serine-505 is required for arachidonic acid release in vascular smooth muscle cells

(2008) Zoran Pavicevic et al.   JOURNAL OF LIPID RESEARCH

Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis

(2008) Samuel H. Payne et al.   JOURNAL OF PROTEOME RESEARCH

Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications†

(2008) Xiuxia Du et al.   JOURNAL OF PROTEOME RESEARCH

A Fast SEQUEST Cross Correlation Algorithm

(2008) Jimmy K. Eng et al.   JOURNAL OF PROTEOME RESEARCH

PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSnData

(2008) Brian E. Ruttenberg et al.   JOURNAL OF PROTEOME RESEARCH

Clustering Millions of Tandem Mass Spectra

(2007) Ari M. Frank et al.   JOURNAL OF PROTEOME RESEARCH