Accurate single-sequence prediction of solvent accessible surface area using local and global features

A global machine learning based scoring function for protein structure prediction

(2013) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Analysis and Prediction of RNA-Binding Residues Using Sequence, Evolutionary Conservation, and Predicted Secondary Structure and Solvent Accessibility

(2011) Tuo Zhang et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

A sequence-based computational model for the prediction of the solvent accessible surface area for α-helix and β-barrel transmembrane residues

(2011) Chengqi Wang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

(2011) Eshel Faraggi et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Derivatives of molecular surface area and volume: Simple and exact analytical formulas

(2011) Konstantin V. Klenin et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Critical assessment of methods of protein structure prediction (CASP)-round IX

(2011) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Assessment of a Novel Scoring Method Based on Solvent Accessible Surface Area Descriptors

(2010) Sara Núñez et al.   Journal of Chemical Information and Modeling

Potential for Protein Surface Shape Analysis Using Spherical Harmonics and 3D Zernike Descriptors

(2009) Vishwesh Venkatraman et al.   CELL BIOCHEMISTRY AND BIOPHYSICS

Solvent accessible surface area approximations for rapid and accurate protein structure prediction

(2009) Elizabeth Durham et al.   JOURNAL OF MOLECULAR MODELING

On the relation between residue flexibility and local solvent accessibility in proteins

(2009) Hua Zhang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

(2009) Eshel Faraggi et al.   STRUCTURE

BLOSUM62 miscalculations improve search performance

(2008) Mark P Styczynski et al.   NATURE BIOTECHNOLOGY

Real-value prediction of backbone torsion angles

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improving the prediction accuracy of residue solvent accessibility and real-value backbone torsion angles of proteins by guided-learning through a two-layer neural network

(2008) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Characterization of local geometry of protein surfaces with the visibility criterion

(2007) Bin Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS