Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds

Metabolic engineering and transhydrogenase effects on NADPH availability inescherichia coli

(2013) Joanna Jan et al.   BIOTECHNOLOGY PROGRESS

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

(2013) Luca Parca et al.   NUCLEIC ACIDS RESEARCH

Toward community standards in the quest for orthologs

(2012) C. Dessimoz et al.   BIOINFORMATICS

Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank

(2012) James H. Collier et al.   NUCLEIC ACIDS RESEARCH

BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA

(2012) Ida Schomburg et al.   NUCLEIC ACIDS RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

(2011) I. Pagani et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Prediction of FAD interacting residues in a protein from its primary sequence using evolutionary information

(2010) Nitish K Mishra et al.   BMC BIOINFORMATICS

Identification of NAD interacting residues in proteins

(2010) Hifzur R Ansari et al.   BMC BIOINFORMATICS

Selection of representative protein data sets

(2010) Uwe Hobohm et al.   PROTEIN SCIENCE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Computational design ofCandida boidiniixylose reductase for altered cofactor specificity

(2009) George A. Khoury et al.   PROTEIN SCIENCE

Replacing Escherichia coli NAD-dependent glyceraldehyde 3-phosphate dehydrogenase (GAPDH) with a NADP-dependent enzyme from Clostridium acetobutylicum facilitates NADPH dependent pathways

(2008) Irene Martínez et al.   METABOLIC ENGINEERING