Flexible docking and refinement with a coarse-grained protein model using ATTRACT

Combining coarse-grained nonbonded and atomistic bonded interactions for protein modeling

(2013) Martin Zacharias   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structural basis of bacterial defense against g-type lysozyme-based innate immunity

(2012) S. Leysen et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Structure of the Ultra-High-Affinity Colicin E2 DNase–Im2 Complex

(2012) Justyna Aleksandra Wojdyla et al.   JOURNAL OF MOLECULAR BIOLOGY

Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing

(2012) Timothy A Whitehead et al.   NATURE BIOTECHNOLOGY

ATTRACT-EM: A New Method for the Computational Assembly of Large Molecular Machines Using Cryo-EM Maps

(2012) Sjoerd J. de Vries et al.   PLoS One

Mechanism of activation of methyltransferases involved in translation by the Trm112 ‘hub’ protein

(2011) Dominique Liger et al.   NUCLEIC ACIDS RESEARCH

Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

(2011) S. J. Fleishman et al.   SCIENCE

Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT

(2010) Sébastien Fiorucci et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Docking and scoring protein interactions: CAPRI 2009

(2010) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Designing coarse grained-and atom based-potentials for protein-protein docking

(2010) Dror Tobi   BMC STRUCTURAL BIOLOGY

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

PTools: an opensource molecular docking library

(2009) Adrien Saladin et al.   BMC STRUCTURAL BIOLOGY