PRL-dock: Protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling

A Shape Descriptor for Fast Complementarity Matching in Molecular Docking

(2011) A. Axenopoulos et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

PocketAlign A Novel Algorithm for Aligning Binding Sites in Protein Structures

(2011) Kalidas Yeturu et al.   Journal of Chemical Information and Modeling

Surface-histogram: A new shape descriptor for protein-protein docking

(2011) Shengyin Gu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Minimal ensembles of side chain conformers for modeling protein-protein interactions

(2011) Dmitri Beglov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Outstanding challenges in protein-ligand docking and structure-based virtual screening

(2011) Bohdan Waszkowycz et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

A machine learning approach to predicting protein–ligand binding affinity with applications to molecular docking

(2010) Pedro J. Ballester et al.   BIOINFORMATICS

Toward a Robust Search Method for the Protein-Drug Docking Problem

(2010) B S Sadjad et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Advances and Challenges in Protein-Ligand Docking

(2010) Sheng-You Huang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Searching Protein Three-Dimensional Structures in Faster Than Linear Time

(2010) Tetsuo Shibuya   JOURNAL OF COMPUTATIONAL BIOLOGY

$F^2$Dock: Fast Fourier Protein-Protein Docking

(2009) C L Bajaj et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity

(2009) Wenjia Luo et al.   JOURNAL OF MOLECULAR MODELING

A probabilistic relaxation labeling framework for reducing the noise effect in geometric biclustering of gene expression data

(2009) Hongya Zhao et al.   PATTERN RECOGNITION

Towards improving compound selection in structure-based virtual screening

(2008) Bohdan Waszkowycz   DRUG DISCOVERY TODAY

Prediction of Interacting Single-Stranded RNA Bases by Protein-Binding Patterns

(2008) Alexandra Shulman-Peleg et al.   JOURNAL OF MOLECULAR BIOLOGY

RosettaLigand Docking with Full Ligand and Receptor Flexibility

(2008) Ian W. Davis et al.   JOURNAL OF MOLECULAR BIOLOGY