Multiscale modeling of cellular actin filaments: From atomistic molecular to coarse-grained dynamics

Structural modeling and molecular dynamics simulation of the actin filament

(2011) Thomas Splettstoesser et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Biomechanics of actin filaments: A computational multi-level study

(2010) Marco A. Deriu et al.   JOURNAL OF BIOMECHANICS

Practical modeling of molecular systems with symmetries

(2010) Sergei Grudinin et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Multiscale methods for protein folding simulations

(2010) Wenfei Li et al.   METHODS

Actin filament remodeling by actin depolymerization factor/cofilin

(2010) J. Pfaendtner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Dynamics of the Actin Filament

(2009) Jim Pfaendtner et al.   JOURNAL OF MOLECULAR BIOLOGY

The nature of the globular- to fibrous-actin transition

(2009) Toshiro Oda et al.   NATURE

Nucleotide-dependent conformational states of actin

(2009) J. Pfaendtner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational Analysis of Viscoelastic Properties of Crosslinked Actin Networks

(2009) Taeyoon Kim et al.   PLoS Computational Biology

Mechanical Model of the Tubulin Dimer Based on Molecular Dynamics Simulations

(2008) So̸ren Enemark et al.   JOURNAL OF BIOMECHANICAL ENGINEERING-TRANSACTIONS OF THE ASME

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Cofilin Increases the Bending Flexibility of Actin Filaments: Implications for Severing and Cell Mechanics

(2008) Brannon R. McCullough et al.   JOURNAL OF MOLECULAR BIOLOGY

Protrusion of a Virtual Model Lamellipodium by Actin Polymerization: A Coarse-Grained Langevin Dynamics Model

(2008) Junhwan Jeon et al.   JOURNAL OF STATISTICAL PHYSICS

Crystallographic Conformers of Actin in a Biologically Active Bundle of Filaments

(2007) Yao Cong et al.   JOURNAL OF MOLECULAR BIOLOGY