Separability between overall and internal motion: A protein folding problem

Atomistic molecular simulations of protein folding

(2012) Robert B Best   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structure and Dynamics of an Unfolded Protein Examined by Molecular Dynamics Simulation

(2012) Kresten Lindorff-Larsen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Modulation of Structure and Dynamics by Disulfide Bond Formation in Unfolded States

(2012) Robert Silvers et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Direct Coupling between Global and Internal Motions in a Single Domain Protein? MD Investigation of Extreme Scenarios

(2011) Mehdi Bagheri Hamaneh et al.   BIOPHYSICAL JOURNAL

NMR order parameters calculated in an expanding reference frame: identifying sites of short- and long-range motion

(2011) Eric Johnson   JOURNAL OF BIOMOLECULAR NMR

Simulations of the confinement of ubiquitin in self-assembled reverse micelles

(2011) Jianhui Tian et al.   JOURNAL OF CHEMICAL PHYSICS

Bridging the Gap between Folding Simulations and Experiments: The Case of the Villin Headpiece

(2011) G. Saladino et al.   Journal of Chemical Theory and Computation

Quantitative comparison of villin headpiece subdomain simulations and triplet-triplet energy transfer experiments

(2011) K. A. Beauchamp et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Making connections between ultrafast protein folding kinetics and molecular dynamics simulations

(2011) T. Cellmer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Fast-Folding Proteins Fold

(2011) K. Lindorff-Larsen et al.   SCIENCE

Theoretical Perspectives on Protein Folding

(2010) D. Thirumalai et al.   Annual Review of Biophysics

Dynamic Origins of Differential RNA Binding Function in Two dsRBDs from the miRNA “Microprocessor” Complex

(2010) Christopher Wostenberg et al.   BIOCHEMISTRY

The folding of single domain proteins—have we reached a consensus?

(2010) Tobin R Sosnick et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Detection of Transient Interchain Interactions in the Intrinsically Disordered Protein α-Synuclein by NMR Paramagnetic Relaxation Enhancement

(2010) Kuen-Phon Wu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

An unlocking/relocking barrier in conformational fluctuations of villin headpiece subdomain

(2010) A. Reiner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein folded states are kinetic hubs

(2010) G. R. Bowman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Principles of protein folding - A perspective from simple exact models

(2010) Ken A. Dill et al.   PROTEIN SCIENCE

Structure/Function Implications in a Dynamic Complex of the Intrinsically Disordered Sic1 with the Cdc4 Subunit of an SCF Ubiquitin Ligase

(2010) Tanja Mittag et al.   STRUCTURE

Analysis of Core Packing in a Cooperatively Folded Miniature Protein: The Ultrafast Folding Villin Headpiece Helical Subdomain

(2009) Shifeng Xiao et al.   BIOCHEMISTRY

Common Structural Transitions in Explicit-Solvent Simulations of Villin Headpiece Folding

(2009) Peter L. Freddolino et al.   BIOPHYSICAL JOURNAL

Progress and challenges in the automated construction of Markov state models for full protein systems

(2009) Gregory R. Bowman et al.   JOURNAL OF CHEMICAL PHYSICS

Prediction of the Rotational Tumbling Time for Proteins with Disordered Segments

(2009) Sung-Hun Bae et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Influence of the coupling of interdomain and overall motions on NMR relaxation

(2009) V. Wong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pressure Effects on the Ensemble Dynamics of Ubiquitin Inspected with Molecular Dynamics Simulations and Isotropic Reorientational Eigenmode Dynamics

(2008) Nikolaos G. Sgourakis et al.   BIOPHYSICAL JOURNAL

Model-independent interpretation of NMR relaxation data for unfolded proteins: the acid-denatured state of ACBP

(2008) Kristofer Modig et al.   JOURNAL OF BIOMOLECULAR NMR

Protein Side-Chain Dynamics and Residual Conformational Entropy

(2008) Nikola Trbovic et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops

(2008) Jan Ferner et al.   NUCLEIC ACIDS RESEARCH

Evaluating Rotational Diffusion from Protein MD Simulations†

(2007) Vance Wong et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The role of aromatic residues in the hydrophobic core of the villin headpiece subdomain

(2002) Benjamin S. Frank et al.   PROTEIN SCIENCE