Prescont: Predicting protein-protein interfaces utilizing four residue properties

Functional Assignment of an Enzyme that Catalyzes the Synthesis of an Archaea-Type Ether Lipid in Bacteria

(2011) Harald Guldan et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

PROCOS: Computational analysis of protein-protein complexes

(2011) Florian Fink et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Sequence-based identification of interface residues by an integrative profile combining hydrophobic and evolutionary information

(2010) Peng Chen et al.   BMC BIOINFORMATICS

BALL - biochemical algorithms library 1.3

(2010) Andreas Hildebrandt et al.   BMC BIOINFORMATICS

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility

(2010) Jun-Feng Xia et al.   BMC BIOINFORMATICS

Accounting for conformational changes during protein–protein docking

(2010) Martin Zacharias   CURRENT OPINION IN STRUCTURAL BIOLOGY

Geometrically centered region: A “wet” model of protein binding hot spots not excluding water molecules

(2010) Zhenhua Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein-protein docking benchmark version 4.0

(2010) Howook Hwang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

i-Patch: Interprotein contact prediction using local network information

(2010) Rebecca Hamer et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Blind predictions of protein interfaces by docking calculations in CAPRI

(2010) Marc F. Lensink et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Identifying protein–protein interaction sites in transient complexes with temperature factor, sequence profile and accessible surface area

(2009) Rong Liu et al.   AMINO ACIDS

Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy

(2009) Nurcan Tuncbag et al.   BIOINFORMATICS

Prediction of protein-protein interaction sites using an ensemble method

(2009) Lei Deng et al.   BMC BIOINFORMATICS

Progress and challenges in predicting protein-protein interaction sites

(2009) I. Ezkurdia et al.   BRIEFINGS IN BIOINFORMATICS

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition

(2009) Benjamin Bouvier et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Proteome Organization in a Genome-Reduced Bacterium

(2009) S. Kuhner et al.   SCIENCE

Robustness of the residue conservation score reflecting both frequencies and physicochemistries

(2008) X.-S. Liu et al.   AMINO ACIDS

Prediction of protein-protein binding site by using core interface residue and support vector machine

(2008) Nan Li et al.   BMC BIOINFORMATICS

How Proteins Get in Touch: Interface Prediction in the Study of Biomolecular Complexes

(2008) Sjoerd de Vries et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Data Deposition and Annotation at the Worldwide Protein Data Bank

(2008) Shuchismita Dutta et al.   MOLECULAR BIOTECHNOLOGY

The RosettaDock server for local protein-protein docking

(2008) S. Lyskov et al.   NUCLEIC ACIDS RESEARCH

On defining the dynamics of hydrophobic patches on protein surfaces

(2008) Philip Lijnzaad et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

BIOCHEMISTRY: A Postgenomic Visual Icon

(2008) J. N. Weinstein   SCIENCE

Structure of the Yeast tRNA m7G Methylation Complex

(2008) Nicolas Leulliot et al.   STRUCTURE