Representing and comparing protein folds and fold families using three-dimensional shape-density representations

Ultra-fast FFT protein docking on graphics processors

(2010) David W. Ritchie et al.   BIOINFORMATICS

Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins

(2010) Mark Gerstein et al.   PROTEIN SCIENCE

Fold space unlimited

(2009) Manfred J Sippl   CURRENT OPINION IN STRUCTURAL BIOLOGY

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

(2009) Benoît H Dessailly et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Is protein classification necessary? Toward alternative approaches to function annotation

(2009) Donald Petrey et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A note on difficult structure alignment problems

(2008) M. J. Sippl et al.   BIOINFORMATICS

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

(2008) D. W. Ritchie et al.   BIOINFORMATICS

Exploring the structure and function paradigm

(2008) Oliver C. Redfern et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

(2008) A. L. Cuff et al.   NUCLEIC ACIDS RESEARCH

Fast protein tertiary structure retrieval based on global surface shape similarity

(2008) Lee Sael et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

An extension of spherical harmonics to region-based rotationally invariant descriptors for molecular shape description and comparison

(2007) Lora Mak et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING