Comparison of structure-based and threading-based approaches to protein functional annotation

Automatic identification and representation of protein binding sites for molecular docking

(2010) Jim Ruppert et al.   PROTEIN SCIENCE

Comparison of sequence profiles. Strategies for structural predictions using sequence information

(2010) Leszek Rychlewski et al.   PROTEIN SCIENCE

Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score

(2009) Shashi Pandit et al.   BMC BIOINFORMATICS

Fpocket: An open source platform for ligand pocket detection

(2009) Vincent Le Guilloux et al.   BMC BIOINFORMATICS

EFICAz2: enzyme function inference by a combined approach enhanced by machine learning

(2009) Adrian K Arakaki et al.   BMC BIOINFORMATICS

FINDSITE: a combined evolution/structure-based approach to protein function prediction

(2009) J. Skolnick et al.   BRIEFINGS IN BIOINFORMATICS

Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

(2009) Andrew C. Wallace et al.   PROTEIN SCIENCE

ConFunc—functional annotation in the twilight zone

(2008) Mark N. Wass et al.   BIOINFORMATICS

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids

(2008) David M Kristensen et al.   BMC BIOINFORMATICS

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures

(2008) Gabriele Ausiello et al.   BMC BIOINFORMATICS

3D-Fun: predicting enzyme function from structure

(2008) M. von Grotthuss et al.   NUCLEIC ACIDS RESEARCH

De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

(2008) R. Matthew Ward et al.   PLoS One

The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

(2008) Marco Punta et al.   PLoS Computational Biology