The dataset for protein-RNA binding affinity

A nonredundant structure dataset for benchmarking protein-RNA computational docking

(2012) Sheng-You Huang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Kinetic Rate Constant Prediction Supports the Conformational Selection Mechanism of Protein Binding

(2012) Iain H. Moal et al.   PLoS Computational Biology

Protein–protein binding affinity prediction on a diverse set of structures

(2011) Iain H. Moal et al.   BIOINFORMATICS

Prediction of dinucleotide-specific RNA-binding sites in proteins

(2011) Michael Fernandez et al.   BMC BIOINFORMATICS

DARS-RNP and QUASI-RNP: New statistical potentials for protein-RNA docking

(2011) Irina Tuszynska et al.   BMC BIOINFORMATICS

Specific and Modular Binding Code for Cytosine Recognition in Pumilio/FBF (PUF) RNA-binding Domains

(2011) Shuyun Dong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A universal code for RNA recognition by PUF proteins

(2011) Aleksandra Filipovska et al.   Nature Chemical Biology

A coarse-grained force field for Protein–RNA docking

(2011) Piotr Setny et al.   NUCLEIC ACIDS RESEARCH

A structure-based benchmark for protein-protein binding affinity

(2011) Panagiotis L. Kastritis et al.   PROTEIN SCIENCE

Predicting nucleic acid binding interfaces from structural models of proteins

(2011) Iris Dror et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A new residue-nucleotide propensity potential with structural information considered for discriminating protein-RNA docking decoys

(2011) Chun Hua Li et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

(2010) H. Zhao et al.   NUCLEIC ACIDS RESEARCH