Inferring the inter-host transmission of influenza A virus using patterns of intra-host genetic variation

Immunogenicity and clinical protection against equine influenza by DNA vaccination of ponies

(2012) Alida Ault et al.   VACCINE

Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs

(2012) Pablo R. Murcia et al.   PLoS Pathogens

Experimental transmission of avian-like swine H1N1 influenza virus between immunologically naïve and vaccinated pigs

(2011) Lucy E. Lloyd et al.   Influenza and Other Respiratory Viruses

Genome-Scale Evolution and Phylodynamics of Equine H3N8 Influenza A Virus

(2011) P. R. Murcia et al.   JOURNAL OF VIROLOGY

Statistical inference to advance network models in epidemiology

(2011) David Welch et al.   Epidemics

A Bayesian Approach to Analyse Genetic Variation within RNA Viral Populations

(2011) Trevelyan J. McKinley et al.   PLoS Computational Biology

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Historical thoughts on influenza viral ecosystems, or behold a pale horse, dead dogs, failing fowl, and sick swine

(2010) David M. Morens et al.   Influenza and Other Respiratory Viruses

Intra- and Interhost Evolutionary Dynamics of Equine Influenza Virus

(2010) P. R. Murcia et al.   JOURNAL OF VIROLOGY

Epidemiological and clinical consequences of within-host evolution

(2010) Samuel Alizon et al.   TRENDS IN MICROBIOLOGY

Equine influenza: A review of an unpredictable virus

(2010) Janet M. Daly et al.   VETERINARY JOURNAL

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

The epitope regions of H1-subtype influenza A, with application to vaccine efficacy

(2009) M. W. Deem et al.   PROTEIN ENGINEERING DESIGN & SELECTION

The Role of Genomics in Tracking the Evolution of Influenza A Virus

(2009) Alice Carolyn McHardy et al.   PLoS Pathogens

GSTand its relatives do not measure differentiation

(2008) LOU JOST   MOLECULAR ECOLOGY

Viral complementation allows HIV-1 replication without integration

(2008) Huub C Gelderblom et al.   Retrovirology