Convolutional neural networks automate detection for tracking of submicron-scale particles in 2D and 3D

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Enrichment of dynamic chromosomal crosslinks drive phase separation of the nucleolus

(2017) Caitlin Hult et al.   NUCLEIC ACIDS RESEARCH

Influenza-binding antibodies immobilise influenza viruses in fresh human airway mucus

(2016) Ying-Ying Wang et al.   EUROPEAN RESPIRATORY JOURNAL

Particle tracking microrheology of protein solutions

(2016) Lilian Lam Josephson et al.   JOURNAL OF RHEOLOGY

Model Comparison and Assessment for Single Particle Tracking in Biological Fluids

(2016) Martin Lysy et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets

(2016) Xun Xiao et al.   MEDICAL IMAGE ANALYSIS

Entropy gives rise to topologically associating domains

(2016) Paula A. Vasquez et al.   NUCLEIC ACIDS RESEARCH

Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments

(2016) David A. Van Valen et al.   PLoS Computational Biology

IgG in cervicovaginal mucus traps HSV and prevents vaginal Herpes infections

(2014) Y-Y Wang et al.   Mucosal Immunology

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

A Biophysical Basis for Mucus Solids Concentration as a Candidate Biomarker for Airways Disease

(2014) David B. Hill et al.   PLoS One

Multiple Hypothesis Tracking for Cluttered Biological Image Sequences

(2013) N. Chenouard et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Rapid, accurate particle tracking by calculation of radial symmetry centers

(2012) Raghuveer Parthasarathy   NATURE METHODS

Microrheology of biomaterial hydrogelators

(2012) Kelly M. Schultz et al.   Soft Matter

Biodegradable Nanoparticles Composed Entirely of Safe Materials that Rapidly Penetrate Human Mucus

(2011) Ming Yang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Roles of Dynein and Dynactin in Early Endosome Dynamics Revealed Using Automated Tracking and Global Analysis

(2011) Neftali Flores-Rodriguez et al.   PLoS One

Particle-Tracking Microrheology of Living Cells: Principles and Applications

(2009) Denis Wirtz   Annual Review of Biophysics

Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy

(2009) I. Smal et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Scattering information obtained by optical microscopy: Differential dynamic microscopy and beyond

(2009) Fabio Giavazzi et al.   PHYSICAL REVIEW E

Nanoparticles reveal that human cervicovaginal mucus is riddled with pores larger than viruses

(2009) S. K. Lai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Robust single-particle tracking in live-cell time-lapse sequences

(2008) Khuloud Jaqaman et al.   NATURE METHODS