DNA topology confers sequence specificity to nonspecific architectural proteins
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Title
DNA topology confers sequence specificity to nonspecific architectural proteins
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 111, Issue 47, Pages 16742-16747
Publisher
Proceedings of the National Academy of Sciences
Online
2014-11-11
DOI
10.1073/pnas.1405016111
References
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Note: Only part of the references are listed.- Structural insights into the role of architectural proteins in DNA looping deduced from computer simulations
- (2013) Wilma K. Olson et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- DNA sequence-dependent mechanics and protein-assisted bending in repressor-mediated loop formation
- (2013) James Q Boedicker et al. PHYSICAL BIOLOGY
- Interplay of Protein and DNA Structure Revealed in Simulations of the lac Operon
- (2013) Luke Czapla et al. PLoS One
- Characterization of the Geometry and Topology of DNA Pictured As a Discrete Collection of Atoms
- (2012) Nicolas Clauvelin et al. Journal of Chemical Theory and Computation
- FRET studies of a landscape of Lac repressor-mediated DNA loops
- (2012) Aaron R. Haeusler et al. NUCLEIC ACIDS RESEARCH
- Sequence dependence of transcription factor-mediated DNA looping
- (2012) Stephanie Johnson et al. NUCLEIC ACIDS RESEARCH
- Understanding Apparent DNA Flexibility Enhancement by HU and HMGB Architectural Proteins
- (2011) Luke Czapla et al. JOURNAL OF MOLECULAR BIOLOGY
- Cooperative kinking at distant sites in mechanically stressed DNA
- (2011) Troy A. Lionberger et al. NUCLEIC ACIDS RESEARCH
- Wrapped-Around Models for the Lac Operon Complex
- (2010) Giovanni La Penna et al. BIOPHYSICAL JOURNAL
- Gene repression by minimal lac loops in vivo
- (2010) Laura M. Bond et al. NUCLEIC ACIDS RESEARCH
- Concentration-dependent exchange accelerates turnover of proteins bound to double-stranded DNA
- (2010) J. S. Graham et al. NUCLEIC ACIDS RESEARCH
- p53 Binding to Nucleosomal DNA Depends on the Rotational Positioning of DNA Response Element
- (2009) Geetaram Sahu et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Concentration and Length Dependence of DNA Looping in Transcriptional Regulation
- (2009) Lin Han et al. PLoS One
- Mesoscale modeling of multi-protein–DNA assemblies: The role of the catabolic activator protein in Lac-repressor-mediated looping
- (2008) David Swigon et al. INTERNATIONAL JOURNAL OF NON-LINEAR MECHANICS
- Effects of the Nucleoid Protein HU on the Structure, Flexibility, and Ring-Closure Properties of DNA Deduced from Monte Carlo Simulations
- (2008) Luke Czapla et al. JOURNAL OF MOLECULAR BIOLOGY
- 3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
- (2008) Xiang-Jun Lu et al. Nature Protocols
- Ligand-induced Conformational Changes and Conformational Dynamics in the Solution Structure of the Lactose Repressor Protein
- (2007) Marc Taraban et al. JOURNAL OF MOLECULAR BIOLOGY
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