Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes

Predicting PDZ domain mediated protein interactions from structure

(2013) Shirley Hui et al.   BMC BIOINFORMATICS

Prevalence, Specificity and Determinants of Lipid-Interacting PDZ Domains from an In-Cell Screen and In Vitro Binding Experiments

(2013) Ylva Ivarsson et al.   PLoS One

The switches.ELM Resource: A Compendium of Conditional Regulatory Interaction Interfaces

(2013) K. Van Roey et al.   Science Signaling

Extensions of PSD-95/discs large/ZO-1 (PDZ) domains influence lipid binding and membrane targeting of syntenin-1

(2012) Anna Maria Wawrzyniak et al.   FEBS LETTERS

The emerging contribution of sequence context to the specificity of protein interactions mediated by PDZ domains

(2012) Katja Luck et al.   FEBS LETTERS

Strategies for membrane interaction proteomics: No mass spectrometry required

(2012) Mandy H. Y. Lam et al.   PROTEOMICS

Rewiring of PDZ Domain-Ligand Interaction Network Contributed to Eukaryotic Evolution

(2012) Jinho Kim et al.   PLoS Genetics

Phage display can select over-hydrophobic sequences that may impair prediction of natural domain–peptide interactions

(2011) Katja Luck et al.   BIOINFORMATICS

Split-protein systems: beyond binary protein–protein interactions

(2011) Sujan S Shekhawat et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Emerging Theme: Cellular PDZ Proteins as Common Targets of Pathogenic Viruses

(2011) R. T. Javier et al.   JOURNAL OF VIROLOGY

Attributes of short linear motifs

(2011) Norman E. Davey et al.   Molecular BioSystems

The multiple-specificity landscape of modular peptide recognition domains

(2011) D. Gfeller et al.   Molecular Systems Biology

Autoantigen discovery with a synthetic human peptidome

(2011) H Benjamin Larman et al.   NATURE BIOTECHNOLOGY

TopFIND, a knowledgebase linking protein termini with function

(2011) Philipp F Lange et al.   NATURE METHODS

ELM--the database of eukaryotic linear motifs

(2011) H. Dinkel et al.   NUCLEIC ACIDS RESEARCH

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

Corruption of phage display libraries by target-unrelated clones: Diagnosis and countermeasures

(2010) William D. Thomas et al.   ANALYTICAL BIOCHEMISTRY

Phage display: Concept, innovations, applications and future

(2010) Jyoti Pande et al.   BIOTECHNOLOGY ADVANCES

Computational identification and analysis of protein short linear motifs

(2010) Norman et al.   Frontiers in Bioscience-Landmark

Structure-Based Prediction of the Peptide Sequence Space Recognized by Natural and Synthetic PDZ Domains

(2010) Colin A. Smith et al.   JOURNAL OF MOLECULAR BIOLOGY

Coevolution of PDZ domain–ligand interactions analyzed by high-throughput phage display and deep sequencing

(2010) Andreas Ernst et al.   Molecular BioSystems

How viruses hijack cell regulation

(2010) Norman E. Davey et al.   TRENDS IN BIOCHEMICAL SCIENCES

T7 phage display as a method of peptide ligand discovery for PDZ domain proteins

(2009) Sudhir C. Sharma et al.   BIOPOLYMERS

Synthesis and Application of Peptide Arrays: Quo Vadis SPOT Technology

(2009) Rudolf Volkmer   CHEMBIOCHEM

Scribble Interacts with β-Catenin to Localize Synaptic Vesicles to Synapses

(2009) Yu Sun et al.   MOLECULAR BIOLOGY OF THE CELL

High-density peptide arrays

(2009) Frank Breitling et al.   Molecular BioSystems

Organization and dynamics of PDZ-domain-related supramodules in the postsynaptic density

(2009) Wei Feng et al.   NATURE REVIEWS NEUROSCIENCE

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

(2008) Zhiyong Xi et al.   BMC GENOMICS

Monitoring Protein-Protein Interactions between the Mammalian Integral Membrane Transporters and PDZ-interacting Partners Using a Modified Split-ubiquitin Membrane Yeast Two-hybrid System

(2008) Serge M. Gisler et al.   MOLECULAR & CELLULAR PROTEOMICS

Predicting PDZ domain–peptide interactions from primary sequences

(2008) Jiunn R Chen et al.   NATURE BIOTECHNOLOGY

Estimating the size of the human interactome

(2008) M. P. H. Stumpf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Specificity Map for the PDZ Domain Family

(2008) Raffi Tonikian et al.   PLOS BIOLOGY