De novo prediction of protein folding pathways and structure using the principle of sequential stabilization

The Folding Transition State of Protein L Is Extensive with Nonnative Interactions (and Not Small and Polarized)

(2012) Tae Yeon Yoo et al.   JOURNAL OF MOLECULAR BIOLOGY

Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations

(2012) Yanxin Liu et al.   Journal of Physical Chemistry Letters

Automated Real-Space Refinement of Protein Structures Using a Realistic Backbone Move Set

(2011) Esmael J. Haddadian et al.   BIOPHYSICAL JOURNAL

Modeling large regions in proteins: Applications to loops, termini, and folding

(2011) Aashish N. Adhikari et al.   PROTEIN SCIENCE

How Fast-Folding Proteins Fold

(2011) K. Lindorff-Larsen et al.   SCIENCE

Protein Vivisection Reveals Elusive Intermediates in Folding

(2010) Zhongzhou Zheng et al.   JOURNAL OF MOLECULAR BIOLOGY

Atomistic Folding Simulations of the Five-Helix Bundle Protein λ6−85

(2010) Gregory R. Bowman et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Competition between native topology and nonnative interactions in simple and complex folding kinetics of natural and designed proteins

(2010) Z. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-native interactions play an effective role in protein folding dynamics

(2010) Patrícia F. N. Faísca et al.   PROTEIN SCIENCE

Mimicking the folding pathway to improve homology-free protein structure prediction

(2009) J. DeBartolo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Subdomain Competition, Cooperativity, and Topological Frustration in the Folding of CheY

(2008) Ronald D. Hills et al.   JOURNAL OF MOLECULAR BIOLOGY

Quantifying the Structural Requirements of the Folding Transition State of Protein A and Other Systems

(2008) Michael C. Baxa et al.   JOURNAL OF MOLECULAR BIOLOGY

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

(2008) A. Zarrine-Afsar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA