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The UCSC Genome Browser database: update 2011

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Optimized design and data analysis of tag-based cytosine methylation assays

(2010) Masako Suzuki et al.   GENOME BIOLOGY

A species-generalized probabilistic model-based definition of CpG islands

(2009) Rafael A. Irizarry et al.   MAMMALIAN GENOME

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

(2009) Madeleine P Ball et al.   NATURE BIOTECHNOLOGY

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

(2009) Akiko Doi et al.   NATURE GENETICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Developmental programming of CpG island methylation profiles in the human genome

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Genome-scale relationships between cytosine methylation and dinucleotide abundances in animals

(2008) Martin W. Simmen   GENOMICS

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

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DNA methylation landscapes: provocative insights from epigenomics

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Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing

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Genome-Wide Identification of Estrogen Receptor α-Binding Sites in Mouse Liver

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