Maps of protein structure space reveal a fundamental relationship between protein structure and function

Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding

(2011) Iain Melvin et al.   PLoS Computational Biology

FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately

(2010) Inbal Budowski-Tal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Is protein classification necessary? Toward alternative approaches to function annotation

(2009) Donald Petrey et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Gene ontology functional annotations at the structural domain level

(2009) Daniel Lopez et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein function annotation by homology-based inference

(2009) Yaniv Loewenstein et al.   GENOME BIOLOGY

Exploring the structure and function paradigm

(2008) Oliver C. Redfern et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY