Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method

Evolution of plant RNA polymerase IV/V genes: evidence of subneofunctionalization of duplicated NRPD2/NRPE2-like paralogs in Viola (Violaceae)

(2010) Thomas Marcussen et al.   BMC EVOLUTIONARY BIOLOGY

Lineage-Specific Duplication and Loss of Pepsinogen Genes in Hominoid Evolution

(2010) Yuichi Narita et al.   JOURNAL OF MOLECULAR EVOLUTION

Divergence in function and expression of the NOD26-like intrinsic proteins in plants

(2009) Qingpo Liu et al.   BMC GENOMICS

Distinct Evolutionary Patterns Between Two Duplicated Color Vision Genes Within Cyprinid Fishes

(2009) Zhiqiang Li et al.   JOURNAL OF MOLECULAR EVOLUTION

Divergence of Recently Duplicated M -Type MADS-Box Genes in Petunia

(2009) M. Bemer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptive Evolution of Digestive RNASE1 Genes in Leaf-Eating Monkeys Revisited: New Insights from Ten Additional Colobines

(2009) Li Yu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pistillata—Duplications as a Mode for Floral Diversification in (Basal) Asterids

(2009) Tom Viaene et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular Evolution of the    Lens Crystallin Superfamily: Evidence for a Retained Ancestral Function in  N Crystallins?

(2009) C. J. Weadick et al.   MOLECULAR BIOLOGY AND EVOLUTION

High molecular diversity in the rhodopsin gene in closely related goby fishes: A role for visual pigments in adaptive speciation?

(2009) Maarten H.D. Larmuseau et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

In defense of statistical methods for detecting positive selection

(2009) Z. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The evolution of color vision in nocturnal mammals

(2009) H. Zhao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

(2009) M. Nozawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution and Frequent Gene Conversion in the Brain Expressed X-Linked Gene Family in Mammals

(2008) Liqing Zhang   BIOCHEMICAL GENETICS

Diversification and adaptive sequence evolution of Caenorhabditis lysozymes (Nematoda: Rhabditidae)

(2008) Hinrich Schulenburg et al.   BMC EVOLUTIONARY BIOLOGY

Adaptive evolution of rbcL in Conocephalum (Hepaticae, bryophytes)

(2008) Hidetsugu Miwa et al.   GENE

Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)

(2008) Dangwei Zhou et al.   GENE

Adaptive Evolution of 5'HoxD Genes in the Origin and Diversification of the Cetacean Flipper

(2008) Z. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recent Origins of Sperm Genes in Drosophila

(2008) S. Dorus et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular evolution of PISTILLATA-like genes in the dogwood genus Cornus (Cornaceae)

(2008) Wenheng Zhang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Purifying selection is a prevailing motif in the evolution of ketoacyl synthase domains of polyketide synthases from lichenized fungi

(2007) Lucia Muggia et al.