Article
Chemistry, Applied
Arnab Banerjee, Ranjit De, Bijan Das
Summary: Insight into the role of electrostatic interactions on the hydrodynamics and conformation of aqueous sodium alginate was gained through viscometry. Alginate chains shrink more rapidly in salt-free solutions compared to salt-solutions. In saline media, chains become more flexible with increased salt concentration.
CARBOHYDRATE POLYMERS
(2022)
Article
Chemistry, Physical
Khristine Haydukivska, Viktoria Blavatska, Jaroslaw Paturej
Summary: We investigated the conformational properties of a hyper-branched polymer structure called snowflake polymer, which has a dendrimer-like topology. Through analytical methods and numerical simulations, we found that as the number of branching points increases, the polymer becomes more compact in conformation. This study provides valuable insights into the conformational behavior of snowflake polymer and emphasizes the impact of branching parameters on its overall compactness.
JOURNAL OF MOLECULAR LIQUIDS
(2023)
Article
Materials Science, Multidisciplinary
Ryan A. Fair, Renxuan Xie, Youngmin Lee, Ralph H. Colby, Enrique D. Gomez
Summary: Molecular weight is a critical parameter for polymers, especially conjugated polymers, often measured using gel permeation chromatography (GPC). Due to mismatch in chain flexibilities between samples and standards, as well as poor solubility in the mobile phase, inaccuracies in GPC measurements of conjugated polymers are common. By applying a universal calibration method and in-line concentration measurements, accurate results for polymers of various stiffnesses can be obtained, with the accuracy verified using absolute molecular weights from static light scattering. Measuring the refractive index increment is crucial for confirming full recovery of the polymer and ensuring accurate values of absolute molecular weight from GPC.
ACS APPLIED POLYMER MATERIALS
(2021)
Article
Biochemistry & Molecular Biology
Satyamvada Maurya, Amita Jain, Md Tabish Rehman, Ali Hakamy, Farkad Bantun, Mohamed F. AlAjmi, Vineeta Singh, Aafreen Zehra, Feroz Khan, Shafiul Haque, Bhartendu Nath Mishra
Summary: This study aimed to identify potential new drug targets/candidates for multi-drug-resistant Mycobacterium tuberculosis (Mtb) through computational techniques. The protein structure of ribonuclease VapC2 of Mtb H37Rv was analyzed, and docking studies were performed with 22 anti-TB drugs. Rifampicin showed the best binding energy and was selected as the parent molecule for designing derivatives. One of the derivatives, RIF-155841, showed activity in inhibiting VapC2. Molecular dynamics simulations confirmed the stability of the VapC2-RIF155841 complex, and a chemical synthesis scheme was designed for future validation.
Article
Thermodynamics
Moussa Camara, Jiafang Xu, Tingji Ding, Weidong Zhou, Jinsheng Sun, Hualin Liao, Jun Zhang
Summary: The study conducted molecular dynamics simulations on the phase transition behavior of PNVCL in water, revealing a coil-to-globule transition at 305K; The formation of H-bonds plays a crucial role in the solubility of PNVCL.
FLUID PHASE EQUILIBRIA
(2021)
Article
Biochemistry & Molecular Biology
Chirag C. Mehta, Shishir Rohit, Saumya Patel, Hardik G. Bhatt
Summary: This study conducted molecular docking and MD simulation to evaluate the interaction between three compounds and TNKS enzymes. The results showed that compound-15 exhibited stronger binding to TNKS1 and TNKS2 and formed stable complexes. Hydrophobic stacking and optimal hydrogen bonding were key contributors. This study provides promising candidate compounds for further drug development targeting Wnt-driven colorectal cancers.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS
(2023)
Article
Polymer Science
Zbigniew Adamczyk, Piotr Batys, Wojciech Plazinski, Maria Morga, Dawid Lupa, Aneta Michna
Summary: This study utilized all-atom molecular dynamics simulations to determine physicochemical parameters for poly-l-lysine and lambda-carrageenan, and used these parameters to interpret experimental data including intrinsic viscosity. By calculating the aspect ratio parameter of molecules, the molar mass of macroions can be accurately determined and other properties of macroion molecules in electrolytes can be predicted.
POLYMERS FOR ADVANCED TECHNOLOGIES
(2021)