PamR, a new MarR-like regulator affecting prophages and metabolic genes expression in Bacillus subtilis

Contrasting mechanisms of growth in two model rod-shaped bacteria

(2017) Cyrille Billaudeau et al.   Nature Communications

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis

(2017) Byoung-Mo Koo et al.   Cell Systems

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Molecular mechanisms involved inBacillus subtilisbiofilm formation

(2014) Benjamin Mielich-Süss et al.   ENVIRONMENTAL MICROBIOLOGY

Impact of Spontaneous Prophage Induction on the Fitness of Bacterial Populations and Host-Microbe Interactions

(2014) Arun M. Nanda et al.   JOURNAL OF BACTERIOLOGY

Bacillus subtilis chromosome organization oscillates between two distinct patterns

(2014) X. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MarR family transcription factors

(2013) Anne Grove   CURRENT BIOLOGY

Redox Active Thiol Sensors of Oxidative and Nitrosative Stress

(2012) Andrés Vázquez-Torres   ANTIOXIDANTS & REDOX SIGNALING

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

A Bacillus subtilis sensor kinase involved in triggering biofilm formation on the roots of tomato plants

(2012) Yun Chen et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Characterizing RecA-Independent Induction of Shiga toxin2-Encoding Phages by EDTA Treatment

(2012) Lejla Imamovic et al.   PLoS One

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

The rod to L-form transition of Bacillus subtilis is limited by a requirement for the protoplast to escape from the cell wall sacculus

(2011) Patricia Domínguez-Cuevas et al.   MOLECULAR MICROBIOLOGY

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation

(2010) Onuma Chumsakul et al.   NUCLEIC ACIDS RESEARCH

Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis

(2010) Y.-M. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis

(2010) A. Chastanet et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Mechanisms of Ligand-Mediated Attenuation of DNA Binding by MarR Family Transcriptional Regulators

(2010) I. C. Perera et al.   Journal of Molecular Cell Biology

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Carbon Catabolite Control of the Metabolic Network inBacillus subtilis

(2009) Yasutaro FUJITA   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Differential efficiency of induction of various lambdoid prophages responsible for production of Shiga toxins in response to different induction agents

(2009) Joanna M. Łoś et al.   MICROBIAL PATHOGENESIS

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

The Cell Wall Regulator  I Specifically Suppresses the Lethal Phenotype of mbl Mutants in Bacillus subtilis

(2008) K. Schirner et al.   JOURNAL OF BACTERIOLOGY

A novel regulatory protein governing biofilm formation in Bacillus subtilis

(2008) Frances Chu et al.   MOLECULAR MICROBIOLOGY

Structural genomics reveals EVE as a new ASCH/PUA-related domain

(2008) Claudia Bertonati et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS