Developmentally regulated internal transcription initiation during meiosis in budding yeast

Tunable protein synthesis by transcript isoforms in human cells

(2016) Stephen N Floor et al.   eLife

Sequestration of mRNAs Modulates the Timing of Translation during Meiosis in Budding Yeast

(2015) Liang Jin et al.   MOLECULAR AND CELLULAR BIOLOGY

Alternative transcription initiation leads to expression of a novel ALK isoform in cancer

(2015) Thomas Wiesner et al.   NATURE

The Yeast GSK-3 Homologue Mck1 Is a Key Controller of Quiescence Entry and Chronological Lifespan

(2015) Zhenzhen Quan et al.   PLoS Genetics

SPO24 Is a Transcriptionally Dynamic, Small ORF-Encoding Locus Required for Efficient Sporulation in Saccharomyces cerevisiae

(2014) Sara Hurtado et al.   PLoS One

A developmentally regulated translational control pathway establishes the meiotic chromosome segregation pattern

(2013) L. E. Berchowitz et al.   GENES & DEVELOPMENT

Remodeling of the Rad51 DNA Strand-Exchange Protein by the Srs2 Helicase

(2013) Hiroyuki Sasanuma et al.   GENETICS

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

Extensive Transcript Diversity and Novel Upstream Open Reading Frame Regulation in Yeast

(2013) Karl Waern et al.   G3-Genes Genomes Genetics

A Highly Redundant Gene Network Controls Assembly of the Outer Spore Wall in S. cerevisiae

(2013) Coney Pei-Chen Lin et al.   PLoS Genetics

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Repression of Meiotic Genes by Antisense Transcription and by Fkh2 Transcription Factor in Schizosaccharomyces pombe

(2012) Huei-Mei Chen et al.   PLoS One

Alternative transcription start site selection leads to large differences in translation activity in yeast

(2012) M. F. Rojas-Duran et al.   RNA

Meiosis-induced alterations in transcript architecture and noncoding RNA expression in S. cerevisiae

(2012) K. S. Kim Guisbert et al.   RNA

A Yeast GSK-3 Kinase Mck1 Promotes Cdc6 Degradation to Inhibit DNA Re-Replication

(2012) Amy E. Ikui et al.   PLoS Genetics

Sporulation in the Budding YeastSaccharomyces cerevisiae

(2011) Aaron M. Neiman   GENETICS

ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

(2011) Aaron T. Spivak et al.   NUCLEIC ACIDS RESEARCH

Regulation of entry into gametogenesis

(2011) F. J. van Werven et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

(2011) Ionas Erb et al.   PLoS One

High-Resolution View of the Yeast Meiotic Program Revealed by Ribosome Profiling

(2011) G. A. Brar et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

A paired-end sequencing strategy to map the complex landscape of transcription initiation

(2010) Ting Ni et al.   NATURE METHODS

Biases in Illumina transcriptome sequencing caused by random hexamer priming

(2010) Kasper D. Hansen et al.   NUCLEIC ACIDS RESEARCH

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

(2010) A. Lardenois et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

Meiosis I Is Established through Division-Specific Translational Control of a Cyclin

(2008) Thomas M. Carlile et al.   CELL

Cdc7-Dbf4 Regulates NDT80 Transcription as Well as Reductional Segregation during Budding Yeast Meiosis

(2008) Hsiao-Chi Lo et al.   MOLECULAR BIOLOGY OF THE CELL

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

(2008) Qun Pan et al.   NATURE GENETICS