Modeling miRNA-mRNA interactions that cause phenotypic abnormality in breast cancer patients

Re-thinking miRNA-mRNA interactions: Intertwining issues confound target discovery

(2015) Nicole Cloonan   BIOESSAYS

LEAP: Biomarker Inference Through Learning and Evaluating Association Patterns

(2015) Xia Jiang et al.   GENETIC EPIDEMIOLOGY

MicroRNA–mRNA interactions underlying colorectal cancer molecular subtypes

(2015) Laura Cantini et al.   Nature Communications

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Expression of Notch1 Correlates with Breast Cancer Progression and Prognosis

(2015) Xun Yuan et al.   PLoS One

Learning Predictive Interactions Using Information Gain and Bayesian Network Scoring

(2015) Xia Jiang et al.   PLoS One

Correlation of over-expressions of miR-21 and Notch-1 in human colorectal cancer with clinical stages

(2014) Yao Xiong et al.   LIFE SCIENCES

miRClassify: An advanced web server for miRNA family classification and annotation

(2013) Quan Zou et al.   COMPUTERS IN BIOLOGY AND MEDICINE

The Role of MicroRNAs in Breast Cancer Stem Cells

(2013) Daniela Schwarzenbacher et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Identifying MicroRNA-mRNA regulatory network in colorectal cancer by a combination of expression profile and bioinformatics analysis

(2012) Jihong Fu et al.   BMC Systems Biology

Roles for MicroRNAs in Conferring Robustness to Biological Processes

(2012) Margaret S. Ebert et al.   CELL

miR-21 Expression in Pregnancy-Associated Breast Cancer: A Possible Marker of Poor Prognosis

(2012) Beatriz A. Walter et al.   Journal of Cancer

A Bayesian graphical modeling approach to microRNA regulatory network inference

(2011) Francesco C. Stingo et al.   Annals of Applied Statistics

miR-340 inhibition of breast cancer cell migration and invasion through targeting of oncoprotein c-Met

(2011) Zheng-sheng Wu et al.   CANCER

A Bayesian Method for Evaluating and Discovering Disease Loci Associations

(2011) Xia Jiang et al.   PLoS One

MicroRNA signatures: clinical biomarkers for the diagnosis and treatment of breast cancer

(2011) Cathy A. Andorfer et al.   TRENDS IN MOLECULAR MEDICINE

microRNA, Cell Cycle, and Human Breast Cancer

(2010) Zuoren Yu et al.   AMERICAN JOURNAL OF PATHOLOGY

Regulation of mRNA Translation and Stability by microRNAs

(2010) Marc Robert Fabian et al.   Annual Review of Biochemistry

Identifying functional miRNA–mRNA regulatory modules with correspondence latent dirichlet allocation

(2010) Bing Liu et al.   BIOINFORMATICS

Involvement of NF-κB/miR-448 regulatory feedback loop in chemotherapy-induced epithelial–mesenchymal transition of breast cancer cells

(2010) Q-Q Li et al.   CELL DEATH AND DIFFERENTIATION

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery

(2010) Kai Wang et al.   NUCLEIC ACIDS RESEARCH

miR-661 expression in SNAI1-induced epithelial to mesenchymal transition contributes to breast cancer cell invasion by targeting Nectin-1 and StarD10 messengers

(2010) G Vetter et al.   ONCOGENE

Unregulated miR-96 Induces Cell Proliferation in Human Breast Cancer by Downregulating Transcriptional Factor FOXO3a

(2010) Huanxin Lin et al.   PLoS One

MicroRNA-196a Is a Potential Marker of Progression during Barrett's Metaplasia-Dysplasia-Invasive Adenocarcinoma Sequence in Esophagus

(2009) Dipen M. Maru et al.   AMERICAN JOURNAL OF PATHOLOGY

RNA-Seq gene expression estimation with read mapping uncertainty

(2009) Bo Li et al.   BIOINFORMATICS

Pluripotent factor lin-28 and its homologue lin-28b in epithelial ovarian cancer and their associations with disease outcomes and expression of let-7a and IGF-II

(2009) Lingeng Lu et al.   EUROPEAN JOURNAL OF CANCER

Coordinate Regulation of FOXO1 by miR-27a, miR-96, and miR-182 in Breast Cancer Cells

(2009) Irene K. Guttilla et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Discovery of functional miRNA–mRNA regulatory modules with computational methods

(2009) Bing Liu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

microRNA-Mediated Messenger RNA Deadenylation Contributes to Translational Repression in Mammalian Cells

(2009) Traude H. Beilharz et al.   PLoS One

Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA

(2009) David G. Hendrickson et al.   PLOS BIOLOGY

miR-34a as part of the resistance network in chronic lymphocytic leukemia

(2008) T. Zenz et al.   BLOOD

Genomic Profiling of MicroRNA and Messenger RNA Reveals Deregulated MicroRNA Expression in Prostate Cancer

(2008) S. Ambs et al.   CANCER RESEARCH

A variant affecting a putative miRNA target site in estrogen receptor (ESR) 1 is associated with breast cancer risk in premenopausal women

(2008) Sandrine Tchatchou et al.   CARCINOGENESIS

MicroRNA-21 targets tumor suppressor genes in invasion and metastasis

(2008) Shuomin Zhu et al.   CELL RESEARCH

The impact of microRNAs on protein output

(2008) Daehyun Baek et al.   NATURE

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

A microRNA DNA methylation signature for human cancer metastasis

(2008) A. Lujambio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deadenylation is a widespread effect of miRNA regulation

(2008) A. Eulalio et al.   RNA

MicroRNA miR-21 overexpression in human breast cancer is associated with advanced clinical stage, lymph node metastasis and patient poor prognosis

(2008) L.-X. Yan et al.   RNA