A high-density genetic map and QTL analysis of agronomic traits in foxtail millet [Setaria italica (L.) P. Beauv.] using RAD-seq

A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]

(2016) Xiaomei Fang et al.   BMC GENOMICS

Characterization and Fine Mapping of ( ) in Foxtail Millet

(2016) Cuixia Xue et al.   CROP SCIENCE

The C-terminal motif of SiAGO1b is required for the regulation of growth, development and stress responses in foxtail millet (Setaria italica(L.) P. Beauv)

(2016) Xiaotong Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic analysis of NEKODE1 gene involved in panicle branching of foxtail millet, Setaria italica (L.) P. Beauv., and mapping by using QTL-seq

(2016) Hisato Masumoto et al.   MOLECULAR BREEDING

Gene mapping and functional analysis of the novel leaf color geneSiYGL1in foxtail millet [Setaria italica(L.) P. Beauv]

(2016) Wen Li et al.   PHYSIOLOGIA PLANTARUM

QTL Analysis of Spike Morphological Traits and Plant Height in Winter Wheat (Triticum aestivum L.) Using a High-Density SNP and SSR-Based Linkage Map

(2016) Huijie Zhai et al.   Frontiers in Plant Science

Development and Genetic Control of Plant Architecture and Biomass in the Panicoid Grass, Setaria

(2016) Margarita Mauro-Herrera et al.   PLoS One

Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv.]

(2014) Shuo Zhang et al.   BMC GENOMICS

Genome-wide development of transposable elements-based markers in foxtail millet and construction of an integrated database

(2014) C. B. Yadav et al.   DNA RESEARCH

Mapping of Quantitative Trait Locus (QTLs) that Contribute to Germination and Early Seedling Drought Tolerance in the Interspecific Cross Setaria italica×Setaria viridis

(2014) Lufeng Qie et al.   PLoS One

Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses

(2014) Mehanathan Muthamilarasan et al.   THEORETICAL AND APPLIED GENETICS

A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits

(2013) Harsh Raman et al.   BMC GENOMICS

Plant genome sequencing — applications for crop improvement

(2013) Marie E Bolger et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-Wide Development and Use of Microsatellite Markers for Large-Scale Genotyping Applications in Foxtail Millet [Setaria italica (L.)]

(2013) G. Pandey et al.   DNA RESEARCH

Development of SSR for foxtail millet (Setaria italica (L.) P. Beauv.) and its utility in genetic discrimination of a core set

(2013) Oscar Nnaemeka Obidiegwu et al.   Genes & Genomics

Construction of a foxtail millet linkage map and mapping of spikelet-tipped bristles 1(stb1) by using transposon display markers and simple sequence repeat markers with genome sequence information

(2013) Kei Sato et al.   MOLECULAR BREEDING

RAD-Seq derived markers flank the shell colour and banding loci of theCepaea nemoralissupergene

(2013) Paul M. Richards et al.   MOLECULAR ECOLOGY

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)

(2013) Guanqing Jia et al.   NATURE GENETICS

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Development of eSSR-Markers in Setaria italica and Their Applicability in Studying Genetic Diversity, Cross-Transferability and Comparative Mapping in Millet and Non-Millet Species

(2013) Kajal Kumari et al.   PLoS One

Fine Mapping of the Pond Snail Left-Right Asymmetry (Chirality) Locus Using RAD-Seq and Fibre-FISH

(2013) Mengning Maureen Liu et al.   PLoS One

Identifying the Genome-Wide Sequence Variations and Developing New Molecular Markers for Genetics Research by Re-Sequencing a Landrace Cultivar of Foxtail Millet

(2013) Hui Bai et al.   PLoS One

Molecular mapping of QTLs for wheat flag leaf senescence under water-stress

(2012) M. N. Barakat et al.   BIOLOGIA PLANTARUM

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses

(2012) Charu Lata et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

(2012) Céline Tomaszewski et al.   PLANT BREEDING

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

(2011) Yada Chutimanitsakun et al.   BMC GENOMICS

A 48 SNP set for grapevine cultivar identification

(2011) José A Cabezas et al.   BMC PLANT BIOLOGY

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Development and utilization of novel intron length polymorphic markers in foxtail millet (Setaria italica (L.) P. Beauv.)

(2011) Sarika Gupta et al.   GENOME

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses

(2011) P. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne

(2011) W. F. Pfender et al.   THEORETICAL AND APPLIED GENETICS

High synteny and colinearity among Eucalyptus genomes revealed by high-density comparative genetic mapping

(2011) Corey J. Hudson et al.   Tree Genetics & Genomes

Extensive mtDNA diversity in horses revealed by PCR-SSCP analysis

(2010) S Marklund et al.   ANIMAL GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Setaria viridis: A Model for C4 Photosynthesis

(2010) T. P. Brutnell et al.   PLANT CELL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Agricultural origins and the isotopic identity of domestication in northern China

(2009) L. Barton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics