Microbiomes associated with infective stages of root-knot and lesion nematodes in soil

Chaetomium endophytes: a repository of pharmacologically active metabolites

(2016) Nighat Fatima et al.   ACTA PHYSIOLOGIAE PLANTARUM

Metagenomes provide valuable comparative information on soil microeukaryotes

(2016) Samuel Jacquiod et al.   RESEARCH IN MICROBIOLOGY

Genomic evidence for plant-parasitic nematodes as the earliest Wolbachia hosts

(2016) Amanda M. V. Brown et al.   Scientific Reports

Characterization of Soil Suppressiveness to Root-Knot Nematodes in Organic Horticulture in Plastic Greenhouse

(2016) Ariadna Giné et al.   Frontiers in Plant Science

Associated bacteria of different life stages ofMeloidogyne incognitausing pyrosequencing-based analysis

(2015) Yi Cao et al.   JOURNAL OF BASIC MICROBIOLOGY

Specific Microbial Attachment to Root Knot Nematodes in Suppressive Soil

(2014) M. Adam et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Pathogenicity, Virulence, and Vegetative Compatibility Grouping of Verticillium Isolates from Spinach Seed

(2013) Angela M. Iglesias-Garcia et al.   PLANT DISEASE

Natural occurrence of fungal egg parasites of root-knot nematodes, Meloidogyne spp. in organic and integrated vegetable production systems in Spain

(2012) Ariadna Giné et al.   BIOCONTROL

Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse

(2012) C. H. F. Hansen et al.   DIABETOLOGIA

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Cuticle Surface Coat of Plant-Parasitic Nematodes

(2011) Keith G. Davies et al.   Annual Review of Phytopathology

Burkholderia Species Are Major Inhabitants of White Lupin Cluster Roots

(2011) Laure Weisskopf et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Suppressive biological factors influence populations of root lesion nematode (Pratylenchus thornei) on wheat in vertosols from the northern grain-growing region of Australia

(2011) Graham R Stirling   AUSTRALASIAN PLANT PATHOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less than Those of Different Potato Cultivars

(2009) N. Weinert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biocontrol ofMeloidogyne incognitaon tomato using antagonistic fungi, plant-growth-promoting rhizobacteria and cattle manure

(2009) Zaki A Siddiqui et al.   PEST MANAGEMENT SCIENCE

Relationships between Burkholderia populations and plant parasitic nematodes in sugarcane

(2008) J. Omarjee et al.   APPLIED SOIL ECOLOGY

Interactions betweenEscherichia coliand the plant-parasitic nematodeMeloidogyne javanica

(2008) A.B. Maghodia et al.   JOURNAL OF APPLIED MICROBIOLOGY