Transcriptome Analysis of Taxillusi chinensis (DC.) Danser Seeds in Response to Water Loss

De novo transcriptome characterization and gene expression profiling of the desiccation tolerant moss Bryum argenteum following rehydration

(2015) Bei Gao et al.   BMC GENOMICS

Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress

(2015) Chunqing Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Selection and evaluation of novel reference genes for quantitative reverse transcription PCR (qRT-PCR) based on genome and transcriptome data in Brassica napus L.

(2014) Hongli Yang et al.   GENE

An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex

(2014) Y. Zhang et al.   JOURNAL OF NEUROSCIENCE

Reduced seed germination inArabidopsisover-expressing SWI/SNF2 ATPase genes

(2014) Hendrika A. C. F. Leeggangers et al.   PHYSIOLOGIA PLANTARUM

Dehydration-induced WRKY genes from tobacco and soybean respond to jasmonic acid treatments in BY-2 cell culture

(2013) Roel C. Rabara et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-wide transcriptional analysis of two soybean genotypes under dehydration and rehydration conditions

(2013) Li M Chen et al.   BMC GENOMICS

Assessing De Novo transcriptome assembly metrics for consistency and utility

(2013) Shawn T O’Neil et al.   BMC GENOMICS

Four new hemiterpenoid derivatives from Taxillus chinensis

(2013) Bo Ding et al.   FITOTERAPIA

LEA polypeptide profiling of recalcitrant and orthodox legume seeds reveals ABI3-regulated LEA protein abundance linked to desiccation tolerance

(2013) Julien Delahaie et al.   JOURNAL OF EXPERIMENTAL BOTANY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

eggNOG v4.0: nested orthology inference across 3686 organisms

(2013) Sean Powell et al.   NUCLEIC ACIDS RESEARCH

Transcriptional Dynamics of Two Seed Compartments with Opposing Roles in Arabidopsis Seed Germination

(2013) B. J. W. Dekkers et al.   PLANT PHYSIOLOGY

mRNA-seq Analysis of the Gossypium arboreum transcriptome Reveals Tissue Selective Signaling in Response to Water Stress during Seedling Stage

(2013) Xueyan Zhang et al.   PLoS One

ABI3 controls embryo degreening through Mendel's I locus

(2013) F. Delmas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Flowering time regulation: photoperiod- and temperature-sensing in leaves

(2013) Young Hun Song et al.   TRENDS IN PLANT SCIENCE

Implications of the lack of desiccation tolerance in recalcitrant seeds

(2013) Patricia Berjak et al.   Frontiers in Plant Science

Antioxidant, Anti-inflammatory, and Antiproliferative Activities of Taxillus sutchuenensis

(2012) Chia-Yu Liu et al.   AMERICAN JOURNAL OF CHINESE MEDICINE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

First off the mark: early seed germination

(2011) Karin Weitbrecht et al.   JOURNAL OF EXPERIMENTAL BOTANY

ABA-mediated transcriptional regulation in response to osmotic stress in plants

(2011) Yasunari Fujita et al.   JOURNAL OF PLANT RESEARCH

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Profiling of Dehydration Stress in the Chinese Cabbage (Brassica rapa L. ssp. pekinensis) by Tag Sequencing

(2011) Shuancang Yu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Improvement of stress tolerance of wheat and barley by modulation of expression of DREB/CBF factors

(2010) Sarah Morran et al.   PLANT BIOTECHNOLOGY JOURNAL

Survival of Schismus arabicus seedlings exposed to desiccation depends on annual periodicity

(2010) Yitzchak Gutterman et al.   PLANTA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Dehydration, rehydration, and overhydration alter patterns of gene expression in the Antarctic midge, Belgica antarctica

(2009) Giancarlo Lopez-Martinez et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Differentially expressed genes between drought-tolerant and drought-sensitive barley genotypes in response to drought stress during the reproductive stage

(2009) Peiguo Guo et al.   JOURNAL OF EXPERIMENTAL BOTANY

Reproduction of the eelgrassZostera marinaat the species southern distributional limit in the Eastern Atlantic

(2009) Susana Cabaço et al.   Marine Ecology-An Evolutionary Perspective

Gene expression profiling identifies two regulatory genes controlling dormancy and ABA sensitivity in Arabidopsis seeds

(2009) José M. Barrero et al.   PLANT JOURNAL

Analysis of antioxidant enzyme activity during germination of alfalfa under salt and drought stresses

(2009) Wen-Bin Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Overexpression of a TFIIIA-type zinc finger protein geneZFP252enhances drought and salt tolerance in rice (Oryza sativaL.)

(2008) Dong-Qing Xu et al.   FEBS LETTERS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Parasitic loranthus from Loranthaceae rather than Viscaceae potently inhibits fatty acid synthase and reduces body weight in mice

(2008) Yan Wang et al.   JOURNAL OF ETHNOPHARMACOLOGY

Role of Arabidopsis RAP2.4 in Regulating Light- and Ethylene-Mediated Developmental Processes and Drought Stress Tolerance

(2007) Rong-Cheng Lin et al.   Molecular Plant