Domestication drive the changes of immune and digestive system of Eurasian perch (Perca fluviatilis)

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(2016) Joanna Luczynska et al.   Turkish Journal of Fisheries and Aquatic Sciences

Domestication and tameness: brain gene expression in red junglefowl selected for less fear of humans suggests effects on reproduction and immunology

(2016) Johan Bélteky et al.   Royal Society Open Science

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Reference genome of wild goat (capra aegagrus) and sequencing of goat breeds provide insight into genic basis of goat domestication

(2015) Yang Dong et al.   BMC GENOMICS

Genetic improvement for important farmed aquaculture species with a reference to carp, tilapia and prawns in Asia: achievements, lessons and challenges

(2015) Nguyen Hong Nguyen   FISH AND FISHERIES

The effect of geographical origin of perch (Perca fluviatilisL. 1758) populations on growth rates under natural and aquaculture conditions: a review

(2015) A. Pimakhin et al.   JOURNAL OF APPLIED ICHTHYOLOGY

Genome Sequencing of the Perciform Fish Larimichthys crocea Provides Insights into Molecular and Genetic Mechanisms of Stress Adaptation

(2015) Jingqun Ao et al.   PLoS Genetics

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

(2014) Michael J. Montague et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Current perspectives and the future of domestication studies

(2014) G. Larson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effects of domestication and growth hormone transgenesis on mRNA profiles in rainbow trout (Oncorhynchus mykiss)1

(2013) R. H. Devlin et al.   JOURNAL OF ANIMAL SCIENCE

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

A population genetics view of animal domestication

(2013) Greger Larson et al.   TRENDS IN GENETICS

Cultured fish: integrative biology and management of domestication and interactions with wild fish

(2012) Kai Lorenzen et al.   BIOLOGICAL REVIEWS

Physiological and proteomic responses to single and repeated hypoxia in juvenile Eurasian perch under domestication – Clues to physiological acclimation and humoral immune modulations

(2012) Jessica Douxfils et al.   FISH & SHELLFISH IMMUNOLOGY

Levels of domestication in fish: implications for the sustainable future of aquaculture

(2012) Fabrice Teletchea et al.   FISH AND FISHERIES

Gastrocnemius transcriptome analysis reveals domestication induced gene expression changes between wild and domestic chickens

(2012) Qinghe Li et al.   GENOMICS

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Unknown

(2012) Jiri Kristan et al.   Turkish Journal of Fisheries and Aquatic Sciences

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Does domestication process affect stress response in juvenile Eurasian perch Perca fluviatilis?

(2011) J. Douxfils et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

The serum of rabbitfish (Siganus oramin) has antimicrobial activity to some pathogenic organisms and a novel serum l-amino acid oxidase is isolated

(2011) Fanghua Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Physiological and proteomic evidences that domestication process differentially modulates the immune status of juvenile Eurasian perch (Perca fluviatilis) under chronic confinement stress

(2011) J. Douxfils et al.   FISH & SHELLFISH IMMUNOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

A novel protein isolated from the serum of rabbitfish (Siganus oramin) is lethal to Cryptocaryon irritans

(2010) Fang-Hua Wang et al.   FISH & SHELLFISH IMMUNOLOGY

Genetics of adaptation in domestic farm animals: A review

(2010) T. Mirkena et al.   Livestock Science

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Fatty acid profile of muscles, liver and mesenteric fat in wild and reared perch (Perca fluviatilis L.)

(2009) Barbara Jankowska et al.   FOOD CHEMISTRY

Domestication causes large-scale effects on gene expression in rainbow trout: Analysis of muscle, liver and brain transcriptomes

(2009) Wendy Tymchuk et al.   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The Phenomics and Expression Quantitative Trait Locus Mapping of Brain Transcriptomes Regulating Adaptive Divergence in Lake Whitefish Species Pairs (Coregonus sp.)

(2008) A. R. Whiteley et al.   GENETICS

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS