Underexpression of Specific Interferon Genes Is Associated with Poor Prognosis of Melanoma

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects

(2016) E. Andres Houseman et al.   BMC BIOINFORMATICS

High-throughput genomic profiling of tumor-infiltrating leukocytes

(2016) Aaron M Newman et al.   CURRENT OPINION IN IMMUNOLOGY

Molecular Staging of Sentinel Lymph Nodes Identifies Melanoma Patients at Increased Risk of Nodal Recurrence

(2016) Charles W. Kimbrough et al.   JOURNAL OF THE AMERICAN COLLEGE OF SURGEONS

Molecular techniques for predicting behaviour in melanocytic neoplasms

(2016) Christina Y. Lee et al.   PATHOLOGY

Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing

(2016) Yuchao Jiang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

Intra-tumor heterogeneity of cancer cells and its implications for cancer treatment

(2015) Xiao-xiao Sun et al.   ACTA PHARMACOLOGICA SINICA

Revisiting determinants of prognosis in cutaneous melanoma

(2015) Sarah A. Weiss et al.   CANCER

Genomic Classification of Cutaneous Melanoma

(2015) Rehan Akbani et al.   CELL

Development of a Prognostic Genetic Signature to Predict the Metastatic Risk Associated with Cutaneous Melanoma

(2015) P. Gerami et al.   CLINICAL CANCER RESEARCH

Practical application of new technologies for melanoma diagnosis

(2015) Jordon March et al.   JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY

Gene expression profiling for molecular staging of cutaneous melanoma in patients undergoing sentinel lymph node biopsy

(2015) Pedram Gerami et al.   JOURNAL OF THE AMERICAN ACADEMY OF DERMATOLOGY

Interferon α/β Enhances the Cytotoxic Response of MEK Inhibition in Melanoma

(2015) Oren Litvin et al.   MOLECULAR CELL

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Independent replication of a melanoma subtype gene signature and evaluation of its prognostic value and biological correlates in a population cohort

(2015) Jérémie Nsengimana et al.   Oncotarget

Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent

(2015) Noah Simon et al.   Journal of Statistical Software

Alterations of immune response of non-small cell lung cancer with Azacytidine

(2015) John Wrangle et al.   Oncotarget

S-20

(2014) J. Rautela et al.   CYTOKINE

Dissection of Immune Gene Networks in Primary Melanoma Tumors Critical for Antitumor Surveillance of Patients with Stage II–III Resectable Disease

(2014) Shanthi Sivendran et al.   JOURNAL OF INVESTIGATIVE DERMATOLOGY

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

(2014) Rob Patro et al.   NATURE BIOTECHNOLOGY

Single Nucleotide Polymorphisms within Interferon Signaling Pathway Genes Are Associated with Colorectal Cancer Susceptibility and Survival

(2014) Shun Lu et al.   PLoS One

High-Definition Reconstruction of Clonal Composition in Cancer

(2014) Andrej Fischer et al.   Cell Reports

Inferring Clonal Composition from Multiple Sections of a Breast Cancer

(2014) Habil Zare et al.   PLoS Computational Biology

Budget impact analysis of a novel gene expression assay for the diagnosis of malignant melanoma

(2014) David S. Cassarino et al.   JOURNAL OF MEDICAL ECONOMICS

CellMix: a comprehensive toolbox for gene expression deconvolution

(2013) R. Gaujoux et al.   BIOINFORMATICS

Intratumoral genetic heterogeneity in metastatic melanoma is accompanied by variation in malignant behaviors

(2013) Matthew Anaka et al.   BMC Medical Genomics

Integrated Systems Approach Identifies Genetic Nodes and Networks in Late-Onset Alzheimer’s Disease

(2013) Bin Zhang et al.   CELL

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

Monitoring chronic lymphocytic leukemia progression by whole genome sequencing reveals heterogeneous clonal evolution patterns

(2012) A. Schuh et al.   BLOOD

A nine-gene signature predicting clinical outcome in cutaneous melanoma

(2012) G. Brunner et al.   JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Collaborative Ocular Oncology Group Report Number 1: Prospective Validation of a Multi-Gene Prognostic Assay in Uveal Melanoma

(2012) Michael D. Onken et al.   OPHTHALMOLOGY

Cell Cycle Gene Networks Are Associated with Melanoma Prognosis

(2012) Li Wang et al.   PLoS One

Evaluation of Gene Association Methods for Coexpression Network Construction and Biological Knowledge Discovery

(2012) Sapna Kumari et al.   PLoS One

Resistance of pancreatic cancer cells to oncolytic vesicular stomatitis virus: Role of type I interferon signaling

(2012) Megan Moerdyk-Schauwecker et al.   VIROLOGY

Bone marrow of neuroblastoma patients shows downregulation of CXCL12 expression and presence of IFN signature

(2011) Paola Scaruffi et al.   PEDIATRIC BLOOD & CANCER

Multivariate Analysis of Prognostic Factors Among 2,313 Patients With Stage III Melanoma: Comparison of Nodal Micrometastases Versus Macrometastases

(2010) Charles M. Balch et al.   JOURNAL OF CLINICAL ONCOLOGY

An Accurate, Clinically Feasible Multi-Gene Expression Assay for Predicting Metastasis in Uveal Melanoma

(2010) Michael D. Onken et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Final Version of 2009 AJCC Melanoma Staging and Classification

(2009) Charles M. Balch et al.   JOURNAL OF CLINICAL ONCOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis

(2008) Adam I Riker et al.   BMC Medical Genomics

Increased Expression of the Tumor Suppressor PLZF Is a Continuous Predictor of Long-Term Survival in Malignant Melanoma Patients

(2008) Georg Brunner et al.   CANCER BIOTHERAPY AND RADIOPHARMACEUTICALS

Uveal vs. cutaneous melanoma. Origins and causes of the differences

(2008) Carolina Belmar-Lopez et al.   Clinical & Translational Oncology