Microbial Potential for Ecosystem N Loss Is Increased by Experimental N Deposition

Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses

(2016) Zachary B. Freedman et al.   Frontiers in Microbiology

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Induction of indirect N 2 O and NO emissions by atmospheric nitrogen deposition in (semi-)natural ecosystems in Switzerland

(2015) Tobias Bühlmann et al.   ATMOSPHERIC ENVIRONMENT

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Cost of reactive nitrogen release from human activities to the environment in the United States

(2015) Daniel J Sobota et al.   Environmental Research Letters

Atmospheric N deposition alters connectance, but not functional potential among saprotrophic bacterial communities

(2015) Zachary B. Freedman et al.   MOLECULAR ECOLOGY

Fine roots are the dominant source of recalcitrant plant litter in sugar maple-dominated northern hardwood forests

(2015) Mengxue Xia et al.   NEW PHYTOLOGIST

Differential responses of total and active soil microbial communities to long-term experimental N deposition

(2015) Zachary B. Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Atmospheric N Deposition Increases Bacterial Laccase-Like Multicopper Oxidases: Implications for Organic Matter Decay

(2014) Zachary Freedman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrogen Fertilization Has a Stronger Effect on Soil Nitrogen-Fixing Bacterial Communities than Elevated Atmospheric CO2

(2014) Sean T. Berthrong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

(2014) Jennifer D Rocca et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

An introduction to the analysis of shotgun metagenomic data

(2014) Thomas J. Sharpton   Frontiers in Plant Science

Fungal Diversity in Permafrost and Tallgrass Prairie Soils under Experimental Warming Conditions

(2013) C. Ryan Penton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nitrogen deposition alters nitrogen cycling and reduces soil carbon content in low-productivity semiarid Mediterranean ecosystems

(2013) Raúl Ochoa-Hueso et al.   ENVIRONMENTAL POLLUTION

Responses of soil bacterial and fungal communities to extreme desiccation and rewetting

(2013) Romain L Barnard et al.   ISME Journal

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Consequences of human modification of the global nitrogen cycle

(2013) J. W. Erisman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

(2013) Stéphane Uroz et al.   PLoS One

Towards a molecular understanding of N cycling in northern hardwood forests under future rates of N deposition

(2013) Zachary Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-Term Experimental Nitrogen Deposition Alters the Composition of the Active Fungal Community in the Forest Floor

(2013) Elizabeth M. Entwistle et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Climate change impacts of US reactive nitrogen

(2012) R. W. Pinder et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A consideration of the relative contributions of different microbial subpopulations to the soil N cycle

(2012) Peter J. Bottomley et al.   Frontiers in Microbiology

Functional Ecology of Free-Living Nitrogen Fixation: A Contemporary Perspective

(2011) Sasha C. Reed et al.   Annual Review of Ecology Evolution and Systematics

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Simulated Atmospheric N Deposition Alters Fungal Community Composition and Suppresses Ligninolytic Gene Expression in a Northern Hardwood Forest

(2011) Ivan P. Edwards et al.   PLoS One

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Reduction of forest soil respiration in response to nitrogen deposition

(2010) I. A. Janssens et al.   Nature Geoscience

Responses of ecosystem nitrogen cycle to nitrogen addition: a meta-analysis

(2010) Meng Lu et al.   NEW PHYTOLOGIST

SIMULATED ATMOSPHERIC NO3−DEPOSITION INCREASES SOIL ORGANIC MATTER BY SLOWING DECOMPOSITION

(2009) Donald R. Zak et al.   ECOLOGICAL APPLICATIONS

Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes

(2009) A. C. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling

(2008) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY