Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study

NF-κB/RelA-PKM2 mediates inhibition of glycolysis by fenofibrate in glioblastoma cells

(2015) Dongfeng Han et al.   Oncotarget

No evidence for a shift in pyruvate kinase PKM1 to PKM2 expression during tumorigenesis

(2015) Katharina Bluemlein et al.   Oncotarget

The protein disulfide isomerases PDIA4 and PDIA6 mediate resistance to cisplatin-induced cell death in lung adenocarcinoma

(2014) G Tufo et al.   CELL DEATH AND DIFFERENTIATION

Interactions among mitochondrial proteins altered in glioblastoma

(2014) Ruth F. Deighton et al.   JOURNAL OF NEURO-ONCOLOGY

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Repairing DNA damage by XRCC6/KU70 reverses TLR4-deficiency-worsened HCC development via restoring senescence and autophagic flux

(2013) Ziyan Wang et al.   Autophagy

Overexpression of YWHAZ relates to tumor cell proliferation and malignant outcome of gastric carcinoma

(2013) Y Nishimura et al.   BRITISH JOURNAL OF CANCER

Adaptive Changes in the Neuronal Proteome: Mitochondrial Energy Production, Endoplasmic Reticulum Stress, and Ribosomal Dysfunction in the Cellular Response to Metabolic Stress

(2013) Abigail G Herrmann et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

A chemostat array enables the spatio-temporal analysis of the yeast proteome

(2013) N. Denervaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical Analysis Reveals Co-Expression Patterns of Many Pairs of Genes in Yeast Are Jointly Regulated by Interacting Loci

(2013) Lin Wang et al.   PLoS Genetics

Where the endoplasmic reticulum and the mitochondrion tie the knot: The mitochondria-associated membrane (MAM)

(2012) Arun Raturi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Proteomic Analysis of Mitochondria in APOE Transgenic Mice and in Response to an Ischemic Challenge

(2011) Rachel James et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

dbDEPC 2.0: updated database of differentially expressed proteins in human cancers

(2011) Ying He et al.   NUCLEIC ACIDS RESEARCH

The role of statistical power analysis in quantitative proteomics

(2011) Yishai Levin   PROTEOMICS

Global Proteomics Reveal an Atypical Strategy for Carbon/Nitrogen Assimilation by a Cyanobacterium Under Diverse Environmental Perturbations

(2010) Kimberly M. Wegener et al.   MOLECULAR & CELLULAR PROTEOMICS

ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems

(2010) V. Kaimal et al.   NUCLEIC ACIDS RESEARCH

The alternative splicing repressors hnRNP A1/A2 and PTB influence pyruvate kinase isoform expression and cell metabolism

(2010) C. V. Clower et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

bioDBnet: the biological database network

(2009) Uma Mudunuri et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast

(2009) Vera Pancaldi et al.   Molecular BioSystems

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Critical Role of the Stress Chaperone GRP78/BiP in Tumor Proliferation, Survival, and Tumor Angiogenesis in Transgene-Induced Mammary Tumor Development

(2008) D. Dong et al.   CANCER RESEARCH

Search for Potential Markers for Prostate Cancer Diagnosis, Prognosis and Treatment in Clinical Tissue Specimens Using Amine-Specific Isobaric Tagging (iTRAQ) with Two-Dimensional Liquid Chromatography and Tandem Mass Spectrometry

(2008) Spiros D. Garbis et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative Proteomic Signature of Liver Cancer Cells: Tissue Transglutaminase 2 Could Be a Novel Protein Candidate of Human Hepatocellular Carcinoma

(2008) Yulin Sun et al.   JOURNAL OF PROTEOME RESEARCH

Proteome Profiling of Breast Tumors by Gel Electrophoresis and Nanoscale Electrospray Ionization Mass Spectrometry

(2008) Louise Alldridge et al.   JOURNAL OF PROTEOME RESEARCH

The M2 splice isoform of pyruvate kinase is important for cancer metabolism and tumour growth

(2008) Heather R. Christofk et al.   NATURE

Synaptic Vesicle-bound Pyruvate Kinase can Support Vesicular Glutamate Uptake

(2008) Atsuhiko Ishida et al.   NEUROCHEMICAL RESEARCH