Deciphering the Molecular Variations of Pine Wood Nematode Bursaphelenchus xylophilus with Different Virulence

Deep sequencing analyses of pine wood nematode Bursaphelenchus xylophilus microRNAs reveal distinct miRNA expression patterns during the pathological process of pine wilt disease

(2015) XiaoLei Ding et al.   GENE

Identification and characterization of parasitism genes from the pinewood nematodeBursaphelenchus xylophilusreveals a multilayered detoxification strategy

(2015) Margarida Espada et al.   MOLECULAR PLANT PATHOLOGY

Ten years of next-generation sequencing technology

(2014) Erwin L. van Dijk et al.   TRENDS IN GENETICS

Pine Wood Nematode,Bursaphelenchus xylophilus

(2013) Kazuyoshi Futai   Annual Review of Phytopathology

RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations

(2013) Graeme D.M. Bell et al.   Genome Biology and Evolution

Molecular hyperdiversity and evolution in very large populations

(2013) Asher D. Cutter et al.   MOLECULAR ECOLOGY

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors

(2013) Z. Ye et al.   NUCLEIC ACIDS RESEARCH

RNA-Seq and human complex diseases: recent accomplishments and future perspectives

(2012) Valerio Costa et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Comparative transcriptomics of two pathogenic pinewood nematodes yields insights into parasitic adaptation to life on pine hosts

(2012) Xia Yan et al.   GENE

Detecting differential usage of exons from RNA-seq data

(2012) S. Anders et al.   GENOME RESEARCH

CEDER: Accurate Detection of Differentially Expressed Genes by Combining Significance of Exons Using RNA-Seq

(2012) Lin Wan et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Uncovering Small RNA-Mediated Responses to Cold Stress in a Wheat Thermosensitive Genic Male-Sterile Line by Deep Sequencing

(2012) Z. Tang et al.   PLANT PHYSIOLOGY

Virulence of Bursaphelenchus xylophilus Isolated from Naturally Infested Pine Forests to Five Resistant Families of Pinus thunbergii

(2011) Mitsuteru Akiba et al.   PLANT DISEASE

Dynamic changes in the human methylome during differentiation

(2010) L. Laurent et al.   GENOME RESEARCH

Analysis and design of RNA sequencing experiments for identifying isoform regulation

(2010) Yarden Katz et al.   NATURE METHODS

Genome-wide allele-specific analysis: insights into regulatory variation

(2010) Tomi Pastinen   NATURE REVIEWS GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

Hydrogen Peroxide in Plants: a Versatile Molecule of the Reactive Oxygen Species Network

(2008) Li-Juan Quan et al.   Journal of Integrative Plant Biology

Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host–parasite interactions

(2008) JOHN T. JONES et al.   MOLECULAR PLANT PATHOLOGY