Comparative Analysis of Begonia Plastid Genomes and Their Utility for Species-Level Phylogenetics

Continental-scale diversification patterns in a megadiverse genus: the biogeography of NeotropicalBegonia

(2015) Peter W. Moonlight et al.   JOURNAL OF BIOGEOGRAPHY

Population history and seed dispersal in widespread Central AmericanBegoniaspecies (Begoniaceae) inferred from plastome-derived microsatellite markers

(2012) Alex D. Twyford et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

A non-coding plastid DNA phylogeny of Asian Begonia (Begoniaceae): Evidence for morphological homoplasy and sectional polyphyly

(2011) D.C. Thomas et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)

(2011) Yun-Jie Zhang et al.   PLoS One

High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA

(2011) Wenqin Wang et al.   PLoS One

The early evolution of the mega-diverse genus Begonia (Begoniaceae) inferred from organelle DNA phylogenies

(2010) WILLIAM P. GOODALL-COPESTAKE et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines

(2010) J. B. WHITTALL et al.   MOLECULAR ECOLOGY

The origin of a mega-diverse genus: datingBegonia(Begoniaceae) using alternative datasets, calibrations and relaxed clock methods

(2009) WILLIAM P. GOODALL-COPESTAKE et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): Unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer

(2008) Jean-Simon Brouard et al.   BMC GENOMICS

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Population genetic divergence corresponds with species-level biodiversity patterns in the large genusBegonia

(2008) M. HUGHES et al.   MOLECULAR ECOLOGY

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

(2008) Richard Cronn et al.   NUCLEIC ACIDS RESEARCH