Patterns of Phylogenetic Diversity of Subtropical Rainforest of the Great Sandy Region, Australia Indicate Long Term Climatic Refugia

Woody Species Alpha-diversity and Species Abundance Distributions in an African Semi-deciduous Tropical Rain Forest

(2015) Edward N. Mwavu et al.   BIOTROPICA

Geology shapes biogeography: Quaternary river-capture explains New Zealand's biologically ‘composite’ Taieri River

(2015) Jonathan M. Waters et al.   QUATERNARY SCIENCE REVIEWS

Mapping Biodiversity and Setting Conservation Priorities for SE Queensland’s Rainforests Using DNA Barcoding

(2015) Alison Shapcott et al.   PLoS One

Using phylogenetic diversity to identify ancient rain forest refugia and diversification zones in a biodiversity hotspot

(2014) Craig M. Costion et al.   DIVERSITY AND DISTRIBUTIONS

Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach

(2014) David L. Erickson et al.   Frontiers in Genetics

Consequences of long- and short-term fragmentation on the genetic diversity and differentiation of a late successional rainforest conifer

(2013) Rohan Mellick et al.   AUSTRALIAN JOURNAL OF BOTANY

Patterns of rain forest plant endemism in subtropical Australia relate to stable mesic refugia and species dispersal limitations

(2013) Lui C. Weber et al.   JOURNAL OF BIOGEOGRAPHY

Landscape Patterns in Rainforest Phylogenetic Signal: Isolated Islands of Refugia or Structured Continental Distributions?

(2013) Robert M. Kooyman et al.   PLoS One

Carbon Stocks and Fluxes in Tropical Lowland Dipterocarp Rainforests in Sabah, Malaysian Borneo

(2012) Philippe Saner et al.   PLoS One

Geological Substrates Shape Tree Species and Trait Distributions in African Moist Forests

(2012) Adeline Fayolle et al.   PLoS One

Phylogenetic tests of community assembly across regional to continental scales in tropical and subtropical rain forests

(2011) Robert Kooyman et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota

(2011) Margaret Byrne et al.   JOURNAL OF BIOGEOGRAPHY

Causes of Plant Diversification in the Cape Biodiversity Hotspot of South Africa

(2011) Jan Schnitzler et al.   SYSTEMATIC BIOLOGY

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Spatial patterns of phylogenetic diversity

(2010) Hélène Morlon et al.   ECOLOGY LETTERS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Conserving the Stage: Climate Change and the Geophysical Underpinnings of Species Diversity

(2010) Mark G. Anderson et al.   PLoS One

Traits, Habitats, and Clades: Identifying Traits of Potential Importance to Environmental Filtering

(2009) Margaret M. Mayfield et al.   AMERICAN NATURALIST

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

(2009)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Angiosperm diversification through time

(2008) Susana Magallón et al.   AMERICAN JOURNAL OF BOTANY

Globally basal centres of endemism: the Tasman-Coral Sea region (south-west Pacific), Latin America and Madagascar/South Africa

(2008) MICHAEL HEADS   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Emerging patterns in the comparative analysis of phylogenetic community structure

(2008) S. M. VAMOSI et al.   MOLECULAR ECOLOGY