Revelation of Influencing Factors in Overall Codon Usage Bias of Equine Influenza Viruses

Equine and Canine Influenza H3N8 Viruses Show Minimal Biological Differences Despite Phylogenetic Divergence

(2015) Kurtis H. Feng et al.   JOURNAL OF VIROLOGY

Immunologic Characterization of a Rhesus Macaque H1N1 Challenge Model for Candidate Influenza Virus Vaccine Assessment

(2014) Jason A. Skinner et al.   Clinical and Vaccine Immunology

RNase L Targets Distinct Sites in Influenza A Virus RNAs

(2014) Daphne A. Cooper et al.   JOURNAL OF VIROLOGY

Genome-Wide Analysis of Codon Usage and Influencing Factors in Chikungunya Viruses

(2014) Azeem Mehmood Butt et al.   PLoS One

Quantitative theory of entropic forces acting on constrained nucleotide sequences applied to viruses

(2014) Benjamin D. Greenbaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A detailed comparative analysis on the overall codon usage patterns in West Nile virus

(2013) Gonzalo Moratorio et al.   INFECTION GENETICS AND EVOLUTION

Efficacy of Influenza Vaccination of Elderly Rhesus Macaques Is Dramatically Improved by Addition of a Cationic Lipid/DNA Adjuvant

(2013) T. D. Carroll et al.   JOURNAL OF INFECTIOUS DISEASES

CpG Usage in RNA Viruses: Data and Hypotheses

(2013) Xiaofei Cheng et al.   PLoS One

Comprehensive analysis of the overall codon usage patterns in equine infectious anemia virus

(2013) Xin Yin et al.   Virology Journal

Genetic analysis of the PB1-F2 gene of equine influenza virus

(2013) Gang Lu et al.   VIRUS GENES

Good Codons, Bad Transcript: Large Reductions in Gene Expression and Fitness Arising from Synonymous Mutations in a Key Enzyme

(2012) Deepa Agashe et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pandemic influenza A virus codon usage revisited: biases, adaptation and implications for vaccine strain development

(2012) Natalia Goñi et al.   Virology Journal

Analysis of human P[4]G2 rotavirus strains isolated in Brazil reveals codon usage bias and strong compositional constraints

(2011) Mariela Martínez Gómez et al.   INFECTION GENETICS AND EVOLUTION

Oligonucleotide Motifs That Disappear during the Evolution of Influenza Virus in Humans Increase Alpha Interferon Secretion by Plasmacytoid Dendritic Cells

(2011) S. Jimenez-Baranda et al.   JOURNAL OF VIROLOGY

Genome-Scale Evolution and Phylodynamics of Equine H3N8 Influenza A Virus

(2011) P. R. Murcia et al.   JOURNAL OF VIROLOGY

HIV-1 Modulates the tRNA Pool to Improve Translation Efficiency

(2011) A. van Weringh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Analysis of synonymous codon usage in Hepatitis A virus

(2011) Yiqiang Zhang et al.   Virology Journal

Codon usage bias in herpesvirus

(2010) Minghui Fu   ARCHIVES OF VIROLOGY

Analysis of codon usage in bovine viral diarrhea virus

(2010) Meng Wang et al.   ARCHIVES OF VIROLOGY

Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus

(2010) Emily HM Wong et al.   BMC EVOLUTIONARY BIOLOGY

Synonymous but not the same: the causes and consequences of codon bias

(2010) Joshua B. Plotkin et al.   NATURE REVIEWS GENETICS

Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis

(2010) D. Anhlan et al.   RNA

Establishment of a cynomolgus macaque model of influenza B virus infection

(2010) Mitsutaka Kitano et al.   VIROLOGY

A Complicated Message: Identification of a Novel PB1-Related Protein Translated from Influenza A Virus Segment 2 mRNA

(2009) H. M. Wise et al.   JOURNAL OF VIROLOGY

Patterns of Oligonucleotide Sequences in Viral and Host Cell RNA Identify Mediators of the Host Innate Immune System

(2009) Benjamin D. Greenbaum et al.   PLoS One

Selection on Codon Bias

(2008) Ruth Hershberg et al.   Annual Review of Genetics

CAIcal: A combined set of tools to assess codon usage adaptation

(2008) Pere Puigbò et al.   Biology Direct

Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage

(2008) Z. Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

GtRNAdb: a database of transfer RNA genes detected in genomic sequence

(2008) P. P. Chan et al.   NUCLEIC ACIDS RESEARCH

Genome rhetoric and the emergence of compositional bias

(2008) K. Vetsigian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of synonymous codon usage in classical swine fever virus

(2008) Pan Tao et al.   VIRUS GENES

Patterns of Evolution and Host Gene Mimicry in Influenza and Other RNA Viruses

(2008) Benjamin D. Greenbaum et al.   PLoS Pathogens