High-Throughput Analysis of T-DNA Location and Structure Using Sequence Capture

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing

(2014) I. M. Henry et al.   PLANT CELL

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Time- and Cost-Efficient Identification of T-DNA Insertion Sites through Targeted Genomic Sequencing

(2013) Étienne Lepage et al.   PLoS One

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genome-wide LORE1 retrotransposon mutagenesis and high-throughput insertion detection in Lotus japonicus

(2011) Dorian Fabian Urbański et al.   PLANT JOURNAL

A Versatile Set of Ligation-Independent Cloning Vectors for Functional Studies in Plants

(2011) B. De Rybel et al.   PLANT PHYSIOLOGY

Haploid plants produced by centromere-mediated genome elimination

(2010) Maruthachalam Ravi et al.   NATURE

Linking genotype to phenotype using the Arabidopsis unimutant collection

(2010) Ronan C. O’Malley et al.   PLANT JOURNAL

Restriction Site Extension PCR: A Novel Method for High-Throughput Characterization of Tagged DNA Fragments and Genome Walking

(2010) Jiabing Ji et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The T-DNA integration pattern in Arabidopsis transformants is highly determined by the transformed target cell

(2009) Sylvie De Buck et al.   PLANT JOURNAL

Generation of Backbone-Free, Low Transgene Copy Plants by Launching T-DNA from the Agrobacterium Chromosome

(2009) H. Oltmanns et al.   PLANT PHYSIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY