RNA-Seq Based Identification of Candidate Parasitism Genes of Cereal Cyst Nematode (Heterodera avenae) during Incompatible Infection to Aegilops variabilis

Responses of Tomato Genotypes to Avirulent andMi-VirulentMeloidogyne javanicaIsolates Occurring in Israel

(2014) Ionit Iberkleid et al.   PHYTOPATHOLOGY

Transcriptomic Analysis of the Rice White Tip Nematode, Aphelenchoides besseyi (Nematoda: Aphelenchoididae)

(2014) Feng Wang et al.   PLoS One

De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode, Heterodera avenae

(2014) Mukesh Kumar et al.   PLoS One

The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode

(2014) James A Cotton et al.   GENOME BIOLOGY

Exploring the Host Parasitism of the Migratory Plant-Parasitic Nematode Ditylenchus destuctor by Expressed Sequence Tags Analysis

(2013) Huan Peng et al.   PLoS One

GO-Elite: a flexible solution for pathway and ontology over-representation

(2012) Alexander C. Zambon et al.   BIOINFORMATICS

De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode

(2012) De-Lin Xu et al.   BMC GENOMICS

RNA interference in plant parasitic nematodes: a summary of the current status

(2012) C. J. LILLEY et al.   PARASITOLOGY

How nematodes manipulate plant development pathways for infection

(2011) Godelieve Gheysen et al.   CURRENT OPINION IN PLANT BIOLOGY

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

(2011) J. Wang et al.   GENOME RESEARCH

Horizontal Gene Transfer in Nematodes: A Catalyst for Plant Parasitism?

(2011) Annelies Haegeman et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Genomics and transcriptomics across the diversity of the Nematoda

(2011) M. BLAXTER et al.   PARASITE IMMUNOLOGY

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Expression of Arabidopsis pathogenesis-related genes during nematode infection

(2010) NOUREDDINE HAMAMOUCH et al.   MOLECULAR PLANT PATHOLOGY

Analysis of ascorbate peroxidase genes expressed in resistant and susceptible wheat lines infected by the cereal cyst nematode, Heterodera avenae

(2010) Ester Simonetti et al.   PLANT CELL REPORTS

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

RNAi and Functional Genomics in Plant Parasitic Nematodes

(2009) M. N. Rosso et al.   Annual Review of Phytopathology

The Genomes of Root-Knot Nematodes

(2009) David McK. Bird et al.   Annual Review of Phytopathology

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Sequence mining and transcript profiling to explore cyst nematode parasitism

(2009) Axel A Elling et al.   BMC GENOMICS

Assignment of Aegilops variabilis Eig chromosomes and translocations carrying resistance to nematodes in wheat

(2009) Olivier Coriton et al.   GENOME

Real-Time Quantitative RT-PCR: Design, Calculations, and Statistics

(2009) I. Rieu et al.   PLANT CELL

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Cellulose Binding Protein from the Parasitic Nematode Heterodera schachtii Interacts with Arabidopsis Pectin Methylesterase: Cooperative Cell Wall Modification during Parasitism

(2008) T. Hewezi et al.   PLANT CELL