High-Throughput Profiling of Caenorhabditis elegans Starvation-Responsive microRNAs

PHA-4/FOXA-regulated microRNA feed forward loops during Caenorhabditis elegans dietary restriction

(2016) Awadhesh Pandit et al.   Aging-US

Regulation of Body Fat inCaenorhabditis elegans

(2015) Supriya Srinivasan   Annual Review of Physiology

Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytes

(2015) Samuel W. Lukowski et al.   GENOMICS

Expression Profiling Analysis of the microRNA Response of Cynoglossus semilaevis to Vibrio anguillarum and Other Stimuli

(2015) Guangye Gong et al.   MARINE BIOTECHNOLOGY

Transcriptome dynamics of the microRNA inhibition response

(2015) Jiayu Wen et al.   NUCLEIC ACIDS RESEARCH

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs

(2015) Eric Londin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNAs Mediate Dietary-Restriction-Induced Longevity through PHA-4/FOXA and SKN-1/Nrf Transcription Factors

(2014) Thalyana Smith-Vikos et al.   CURRENT BIOLOGY

mRNA Destabilization Is the Dominant Effect of Mammalian MicroRNAs by the Time Substantial Repression Ensues

(2014) Stephen W. Eichhorn et al.   MOLECULAR CELL

Increased sensitivity and accuracy of a single-stranded DNA splint-mediated ligation assay (sPAT) reveals poly(A) tail length dynamics of developmentally regulated mRNAs

(2014) Ryuji Minasaki et al.   RNA Biology

Steroid hormone signalling links reproduction to lifespan in dietary-restricted Caenorhabditis elegans

(2014) Manjunatha Thondamal et al.   Nature Communications

The Embryonic mir-35 Family of microRNAs Promotes Multiple Aspects of Fecundity in Caenorhabditis elegans

(2014) K. McJunkin et al.   G3-Genes Genomes Genetics

Direct and Indirect Gene Regulation by a Life-Extending FOXO Protein in C. elegans: Roles for GATA Factors and Lipid Gene Regulators

(2013) Peichuan Zhang et al.   Cell Metabolism

Reproduction, Fat Metabolism, and Life Span: What Is the Connection?

(2013) Malene Hansen et al.   Cell Metabolism

Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals

(2013) K. Okamura et al.   GENES & DEVELOPMENT

The Emerging Role of MicroRNAs in the Regulation of Gene Expression by Nutrients

(2013) Laura García-Segura et al.   Journal of Nutrigenetics and Nutrigenomics

Kraken: A set of tools for quality control and analysis of high-throughput sequence data

(2013) Matthew P.A. Davis et al.   METHODS

Loop-miRs: active microRNAs generated from single-stranded loop regions

(2013) Julia Winter et al.   NUCLEIC ACIDS RESEARCH

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Dual Regulation of the lin-14 Target mRNA by the lin-4 miRNA

(2013) Zhen Shi et al.   PLoS One

Ageing and the small, non-coding RNA world

(2012) Masaomi Kato et al.   AGEING RESEARCH REVIEWS

The C. elegans MicroRNA mir-71 Acts in Neurons to Promote Germline-Mediated Longevity through Regulation of DAF-16/FOXO

(2012) Konstantinos Boulias et al.   Cell Metabolism

Germline Stem Cells: Origin and Destiny

(2012) Ruth Lehmann   Cell Stem Cell

Regeneration of Drosophila sensory neuron axons and dendrites is regulated by the Akt pathway involving Pten and microRNA bantam

(2012) Y. Song et al.   GENES & DEVELOPMENT

Can we live longer by eating less? A review of caloric restriction and longevity

(2012) Lauren W. Roth et al.   MATURITAS

A Steroid Receptor-MicroRNA Switch Regulates Life Span in Response to Signals from the Gonad

(2012) Y. Shen et al.   SCIENCE

The miR-35-41 Family of MicroRNAs Regulates RNAi Sensitivity in Caenorhabditis elegans

(2012) Katlin B. Massirer et al.   PLoS Genetics

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

mir-35 is involved in intestine cell G1/S transition and germ cell proliferation in C. elegans

(2011) Min Liu et al.   CELL RESEARCH

Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles

(2011) J. Wang et al.   GENOME RESEARCH

LIN-28 co-transcriptionally binds primary let-7 to regulate miRNA maturation in Caenorhabditis elegans

(2011) Priscilla M Van Wynsberghe et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

WormBase 2012: more genomes, more data, new website

(2011) K. Yook et al.   NUCLEIC ACIDS RESEARCH

The Oogenic Germline Starvation Response in C. elegans

(2011) Hannah S. Seidel et al.   PLoS One

microRNAs play critical roles in the survival and recovery of Caenorhabditis elegans from starvation-induced L1 diapause

(2011) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans

(2011) M. Kato et al.   RNA

Effect of life history on microRNA expression during C. elegans development

(2011) X. Karp et al.   RNA

MicroRNA Predictors of Longevity in Caenorhabditis elegans

(2011) Zachary Pincus et al.   PLoS Genetics

MicroRNAs Both Promote and Antagonize Longevity in C. elegans

(2010) Alexandre de Lencastre et al.   CURRENT BIOLOGY

Many Families of C. elegans MicroRNAs Are Not Essential for Development or Viability

(2010) Ezequiel Alvarez-Saavedra et al.   CURRENT BIOLOGY

The Developmental Timing Regulator hbl-1 Modulates the Dauer Formation Decision in Caenorhabditis elegans

(2010) X. Karp et al.   GENETICS

MicroRNA Functions in Stress Responses

(2010) Anthony K.L. Leung et al.   MOLECULAR CELL

Ancient animal microRNAs and the evolution of tissue identity

(2010) Foteini Christodoulou et al.   NATURE

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs

(2010) Calvin H. Jan et al.   NATURE

A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans

(2010) Marko Jovanovic et al.   NATURE METHODS

Widespread regulatory activity of vertebrate microRNA* species

(2010) J.-S. Yang et al.   RNA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A MicroRNA Imparts Robustness against Environmental Fluctuation during Development

(2009) Xin Li et al.   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Transcription of the C. elegans let-7 microRNA is temporally regulated by one of its targets, hbl-1

(2009) Sarah F. Roush et al.   DEVELOPMENTAL BIOLOGY

Two conserved regulatory cytoplasmic poly(A) polymerases, GLD-4 and GLD-2, regulate meiotic progression in C. elegans

(2009) M. Schmid et al.   GENES & DEVELOPMENT

FBF and Its Dual Control of gld-1 Expression in the Caenorhabditis elegans Germline

(2009) N. Suh et al.   GENETICS

Distinct Mechanisms for MicroRNA Strand Selection by Drosophila Argonautes

(2009) Katsutomo Okamura et al.   MOLECULAR CELL

Hierarchical Rules for Argonaute Loading in Drosophila

(2009) Benjamin Czech et al.   MOLECULAR CELL

The microRNA bantam Functions in Epithelial Cells to Regulate Scaling Growth of Dendrite Arbors in Drosophila Sensory Neurons

(2009) Jay Z. Parrish et al.   NEURON

miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments

(2009) Michael Hackenberg et al.   NUCLEIC ACIDS RESEARCH

The mir-34 microRNA is required for the DNA damage response in vivo in C. elegans and in vitro in human breast cancer cells

(2009) M Kato et al.   ONCOGENE

A feedback circuit involving let-7-family miRNAs and DAF-12 integrates environmental signals and developmental timing in Caenorhabditis elegans

(2009) C. M. Hammell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea

(2009) Y.-C. Lu et al.   RNA

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

(2009) M. Ghildiyal et al.   RNA

Starvation Protects Germline Stem Cells and Extends Reproductive Longevity in C. elegans

(2009) G. Angelo et al.   SCIENCE

Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development

(2009) Masaomi Kato et al.   GENOME BIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The MicroRNA miR-1 Regulates a MEF-2-Dependent Retrograde Signal at Neuromuscular Junctions

(2008) David J. Simon et al.   CELL

CDC-25.1 stability is regulated by distinct domains to restrict cell division during embryogenesis in C. elegans

(2008) M. Hebeisen et al.   DEVELOPMENT

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH