A Coarse Grained Model for a Lipid Membrane with Physiological Composition and Leaflet Asymmetry
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Title
A Coarse Grained Model for a Lipid Membrane with Physiological Composition and Leaflet Asymmetry
Authors
Keywords
Lipids, Cell membranes, Biochemical simulations, Vesicles, Cholesterol, Membrane proteins, Simulation and modeling, Phospholipids
Journal
PLoS One
Volume 10, Issue 12, Pages e0144814
Publisher
Public Library of Science (PLoS)
Online
2015-12-15
DOI
10.1371/journal.pone.0144814
References
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- (2013) Tsjerk A. Wassenaar et al. Journal of Chemical Theory and Computation
- Simulation-Based Prediction of Phosphatidylinositol 4,5-Bisphosphate Binding to an Ion Channel
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- Molecular Mechanism of Cholesterol- and Polyphosphoinositide-Mediated Syntaxin Clustering
- (2011) David H. Murray et al. BIOCHEMISTRY
- Cholesterol asymmetry in synaptic plasma membranes
- (2011) W. Gibson Wood et al. JOURNAL OF NEUROCHEMISTRY
- Interleaflet Interaction and Asymmetry in Phase Separated Lipid Bilayers: Molecular Dynamics Simulations
- (2011) Jason D. Perlmutter et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Dynamic Structure Formation of Peripheral Membrane Proteins
- (2011) Diana Morozova et al. PLoS Computational Biology
- Clustering of Syntaxin-1A in Model Membranes Is Modulated by Phosphatidylinositol 4,5-Bisphosphate and Cholesterol
- (2009) David H. Murray et al. BIOCHEMISTRY
- PIP2-Binding Site in Kir Channels: Definition by Multiscale Biomolecular Simulations
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- Molecular Model of a Cell Plasma Membrane With an Asymmetric Multicomponent Composition: Water Permeation and Ion Effects
- (2009) Robert Vácha et al. BIOPHYSICAL JOURNAL
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- (2009) Chinmay Das et al. BIOPHYSICAL JOURNAL
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- (2009) Lei Qu et al. JOURNAL OF COMPARATIVE NEUROLOGY
- PACKMOL: A package for building initial configurations for molecular dynamics simulations
- (2009) L. Martínez et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Molecular View of Cholesterol Flip-Flop and Chemical Potential in Different Membrane Environments
- (2009) W. F. Drew Bennett et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Asymmetric Distribution of Cholesterol in Unilamellar Vesicles of Monounsaturated Phospholipids
- (2009) Norbert Kučerka et al. LANGMUIR
- The MARTINI Coarse-Grained Force Field: Extension to Proteins
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- (2008) Mousumi Mondal et al. MOLECULAR BIOLOGY OF THE CELL
- Membrane lipids: where they are and how they behave
- (2008) Gerrit van Meer et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The molecular face of lipid rafts in model membranes
- (2008) H. J. Risselada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly
- (2008) Kathryn A. Scott et al. STRUCTURE
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- (2007) Siewert J. Marrink et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
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