miRLocator: Machine Learning-Based Prediction of Mature MicroRNAs within Plant Pre-miRNA Sequences

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology

(2015) Nestoras Karathanasis et al.   PLoS One

Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine

(2014) Jun Meng et al.   BMC BIOINFORMATICS

Evolutionary conservation of microRNA regulatory programs in plant flower development

(2013) Yan Luo et al.   DEVELOPMENTAL BIOLOGY

CoRAL: predicting non-coding RNAs from small RNA-sequencing data

(2013) Yuk Yee Leung et al.   NUCLEIC ACIDS RESEARCH

Computational prediction of the localization of microRNAs within their pre-miRNA

(2013) Mickael Leclercq et al.   NUCLEIC ACIDS RESEARCH

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

A fast ab-initio method for predicting miRNA precursors in genomes

(2012) Sébastien Tempel et al.   NUCLEIC ACIDS RESEARCH

MiRmat: Mature microRNA Sequence Prediction

(2012) Chenfeng He et al.   PLoS One

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functions of microRNAs in plant stress responses

(2012) Ramanjulu Sunkar et al.   TRENDS IN PLANT SCIENCE

Computational methods for ab initio detection of microRNAs

(2012) Jens Allmer et al.   Frontiers in Genetics

The rise and fall of supervised machine learning techniques

(2011) L. J. Jensen et al.   BIOINFORMATICS

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences

(2011) Yonggan Wu et al.   BMC BIOINFORMATICS

MaturePred: Efficient Identification of MicroRNAs within Novel Plant Pre-miRNAs

(2011) Ping Xuan et al.   PLoS One

Letter to the Editor: Stability of Random Forest importance measures

(2010) M. L. Calle et al.   BRIEFINGS IN BIOINFORMATICS

MatureBayes: A Probabilistic Algorithm for Identifying the Mature miRNA within Novel Precursors

(2010) Katerina Gkirtzou et al.   PLoS One