Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences

Underdiagnosis of Clostridium difficile across Europe: the European, multicentre, prospective, biannual, point-prevalence study of Clostridium difficile infection in hospitalised patients with diarrhoea (EUCLID)

(2014) Kerrie A Davies et al.   LANCET INFECTIOUS DISEASES

Multistate Point-Prevalence Survey of Health Care–Associated Infections

(2014) Shelley S. Magill et al.   NEW ENGLAND JOURNAL OF MEDICINE

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Editorial Commentary: Does Infection With Specific Clostridium difficile Strains or Clades Influence Clinical Outcome?

(2013) D. N. Gerding et al.   CLINICAL INFECTIOUS DISEASES

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic

(2013) M. T. G. Holden et al.   GENOME RESEARCH

Variations in Virulence and Molecular Biology among Emerging Strains of Clostridium difficile

(2013) J. J. Hunt et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing

(2013) David W. Eyre et al.   NEW ENGLAND JOURNAL OF MEDICINE

Aktuelle Daten und Trends zur Antibiotikaresistenzentwicklung von Clostridium difficile

(2012) L. von Müller et al.   Bundesgesundheitsblatt-Gesundheitsforschung-Gesundheitsschutz

Current Status of Clostridium difficile Infection Epidemiology

(2012) F. C. Lessa et al.   CLINICAL INFECTIOUS DISEASES

Important clinical advances in the understanding of Clostridium difficile infection

(2012) Susan M. Pacheco et al.   CURRENT OPINION IN GASTROENTEROLOGY

Epidemiology, diagnosis and treatment ofClostridium difficileinfection

(2012) Matteo Bassetti et al.   Expert Review of Anti-Infective Therapy

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

(2012) Miao He et al.   NATURE GENETICS

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics

(2011) F. Bielejec et al.   BIOINFORMATICS

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Genetic Organisation, Mobility and Predicted Functions of Genes on Integrated, Mobile Genetic Elements in Sequenced Strains of Clostridium difficile

(2011) Michael S. M. Brouwer et al.   PLoS One

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Testing Spatiotemporal Hypothesis of Bacterial Evolution Using Methicillin-Resistant Staphylococcus aureus ST239 Genome-wide Data within a Bayesian Framework

(2010) R. R. Gray et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

A Timescale for Evolution, Population Expansion, and Spatial Spread of an Emerging Clone of Methicillin-Resistant Staphylococcus aureus

(2010) Ulrich Nübel et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Characterisation of Clostridium difficile isolates by slpA and tcdC gene sequencing

(2009) Insa Joost et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium

(2009) Richard A Stabler et al.   GENOME BIOLOGY