A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

(2014) Daniel I Speiser et al.   BMC BIOINFORMATICS

Prediction of the first neuropeptides from a member of the Remipedia (Arthropoda, Crustacea)

(2014) Andrew E. Christie   GENERAL AND COMPARATIVE ENDOCRINOLOGY

Using next-generation RNA sequencing to identify imprinted genes

(2014) X Wang et al.   HEREDITY

Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata

(2014) Nathan Kenny et al.   Marine Drugs

The cavefish genome reveals candidate genes for eye loss

(2014) Suzanne E. McGaugh et al.   Nature Communications

A High-Density Linkage Map for Astyanax mexicanus Using Genotyping-by-Sequencing Technology

(2014) Brian M. Carlson et al.   G3-Genes Genomes Genetics

Involvement of Redox State in the Aging of Drosophila melanogaster

(2013) William C. Orr et al.   ANTIOXIDANTS & REDOX SIGNALING

Evolution of the Eye Transcriptome under Constant Darkness in Sinocyclocheilus Cavefish

(2013) Fanwei Meng et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Integrated Transcriptome-Wide Analysis of Cave and Surface Dwelling Astyanax mexicanus

(2013) Joshua B. Gross et al.   PLoS One

De Novo Sequencing of Astyanax mexicanus Surface Fish and Pachón Cavefish Transcriptomes Reveals Enrichment of Mutations in Cavefish Putative Eye Genes

(2013) Hélène Hinaux et al.   PLoS One

The complex origin of Astyanax cavefish

(2012) Joshua B Gross   BMC EVOLUTIONARY BIOLOGY

The ontogeny of color: developmental origins of divergent pigmentation in Drosophila americana and D. novamexicana

(2012) Arielle M. Cooley et al.   EVOLUTION & DEVELOPMENT

Evolution of albinism in cave planthoppers by a convergent defect in the first step of melanin biosynthesis

(2012) Helena Bilandžija et al.   EVOLUTION & DEVELOPMENT

Genomic Imprinting Absent in Drosophila melanogaster Adult Females

(2012) Joseph D. Coolon et al.   Cell Reports

Evolution and development in cave animals: from fish to crustaceans

(2012) Meredith Protas et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Genome-wide approaches to the study of adaptive gene expression evolution

(2011) Hunter B. Fraser   BIOESSAYS

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

Positional cloning of silkworm white egg 2 (w-2) locus shows functional conservation and diversification of ABC transporters for pigmentation in insects

(2011) Ken-ichiro Tatematsu et al.   GENES TO CELLS

Phototransduction and clock gene expression in the troglobiont beetle Ptomaphagus hirtus of Mammoth cave

(2011) M. Friedrich et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Genetic basis of eye and pigment loss in the cave crustacean, Asellus aquaticus

(2011) M. E. Protas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ecoresponsive Genome of Daphnia pulex

(2011) J. K. Colbourne et al.   SCIENCE

Comparing de novo assemblers for 454 transcriptome data

(2010) Sujai Kumar et al.   BMC GENOMICS

Regressive Evolution inAstyanaxCavefish

(2009) William R. Jeffery   Annual Review of Genetics

Pleiotropic functions of embryonic sonic hedgehog expression link jaw and taste bud amplification with eye loss during cavefish evolution

(2009) Yoshiyuki Yamamoto et al.   DEVELOPMENTAL BIOLOGY

Shared and divergent expression domains on mimeticHeliconiuswings

(2009) Laura C. Ferguson et al.   EVOLUTION & DEVELOPMENT

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS